Non-Coding RNA Search

Ss1.1-Ova2-C0003264_A03.5

Sequence:


               
               GGAAGGAGCAGACCGGCTCGGACGATGAAGATGAGTCAAACGAGCAAACTTTGATGTATT
ACGTGAATGATGGAGTGTATGGGTCATTTAACTGCATTCTTTATGACCATGCACATGTGA
AGGCCCTGCTGCAGAAGAGACCCAAGCCAGATGAGAAGTATTACTCATCCAGCATCTGGG
GACCAACATGTGATGGCCTTGATCGGATCGTCGAGCGCTGTAGCCTGCCTGAAATGCATG
TGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACTGTTGCTGCTGCTTCTACTT
TCAATGGGTTCCAGAGGCCAAACATCTACTACGTAATGTCACGGTCAATGTGGCAACTCA
TGAAGCAAATCCAGAGCCATGGCTTCCCGCCAGAAGTGGAGGAGCAGGATGTTGGCACTC
TGCCCATGTCTTGTGCCCAGGAGAGCGGGATGGACCGTCACCCTGCAGCCTGTGCTTCTG
CTACTATCAGTGTATAGATGCCATTCTTGTAGCTCTTACCTGCAAGTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGAGCAGACCGGCTCGGACGATGAAGATGAGTCAAACGAGCAAACTTTGATGTATT
ACGTGAATGATGGAGTGTATGGGTCATTTAACTGCATTCTTTATGACCATGCACATGTGA
AGGCCCTGCTGCAGAAGAGACCCAAGCCAGATGAGAAGTATTACTCATCCAGCATCTGGG
GACCAACATGTGATGGCCTTGATCGGATCGTCGAGCGCTGTAGCCTGCCTGAAATGCATG
TGGGTGATTGGATGCTGTTTGAGAACATGGGTGCATACACTGTTGCTGCTGCTTCTACTT
TCAATGGGTTCCAGAGGCCAAACATCTACTACGTAATGTCACGGTCAATGTGGCAACTCA
TGAAGCAAATCCAGAGCCATGGCTTCCCGCCAGAAGTGGAGGAGCAGGATGTTGGCACTC
TGCCCATGTCTTGTGCCCAGGAGAGCGGGATGGACCGTCACCCTGCAGCCTGTGCTTCTG
CTACTATCAGTGTATAGATGCCATTCTTGTAGCTCTTACCTGCAAGTT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|200131|gb|AAA39848.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|200131|gb|AAA39848.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               82-201, - strand, RNAz p=0.508169
               

               
               362-481, + strand, RNAz p=0.943894

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               82-201, - strand, RNAz p=0.508169
               

               
               362-481, + strand, RNAz p=0.943894

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-522, gnl|bosTau2|chr11 (66707043-66706535)
               

               
               3-522, gnl|Hg17|chr7 (128264051-128264562)
               

               
               3-522, gnl|Mm7|chr5 (95188482-95189001)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-522, gnl|bosTau2|chr11 (66707043-66706535)
               

               
               3-522, gnl|Hg17|chr7 (128264051-128264562)
               

               
               3-522, gnl|Mm7|chr5 (95188482-95189001)

	82-201, - strand, RNAz p=0.508169
	362-481, + strand, RNAz p=0.943894

	3-522, gnl\|bosTau2\|chr11 (66707043-66706535)
	3-522, gnl\|Hg17\|chr7 (128264051-128264562)
	3-522, gnl\|Mm7\|chr5 (95188482-95189001)