Non-Coding RNA Search

Ss1.1-Ova2-C0003264_A08.5

Sequence:


               
               CTGACATGCTGGGGTTCTGCTGAGTTAGCAGAGGAAGTCAGTTTGAATGGTTCTGGAAAA
CTGTTCAAGATTACAGGCTGTACAAGCCCAGGCAAAACAGTGACAATTGTCGTCCGAGGC
TCTAACAAACTGGTGATTGAGGAAGCTGAGCGCTCCATTCACGATGCTCTCTGTGTTATC
CGATGCTTGGTGAAGAAGAGAGCTCTTATTGCAGGAGGTGGTGCTCCAGAAATAGAGCTG
GCCCTCAGACTGACGGAGTACTCCCGGACACTGAGTGGCATGGAGTCCTACTGTGTTCGA
GCTTTTGCAGATGCCATGGAAGTCATTCCATCTACACTGGCTGAAAATGCTGGCCTGAAT
CCCATCTCTACTGTAACAGAGCTAAGAAACCGCCATGCCCAAGGAGAAAAAACTACAGGC
ATTAATGTCCGAAAGGGTGGGATCTCCAACATTCTGGAGGAAATGGTTGTCCAGCCTCTG
TTGGTGTCAGTCAGTGCGTTGACC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTGACATGCTGGGGTTCTGCTGAGTTAGCAGAGGAAGTCAGTTTGAATGGTTCTGGAAAA
CTGTTCAAGATTACAGGCTGTACAAGCCCAGGCAAAACAGTGACAATTGTCGTCCGAGGC
TCTAACAAACTGGTGATTGAGGAAGCTGAGCGCTCCATTCACGATGCTCTCTGTGTTATC
CGATGCTTGGTGAAGAAGAGAGCTCTTATTGCAGGAGGTGGTGCTCCAGAAATAGAGCTG
GCCCTCAGACTGACGGAGTACTCCCGGACACTGAGTGGCATGGAGTCCTACTGTGTTCGA
GCTTTTGCAGATGCCATGGAAGTCATTCCATCTACACTGGCTGAAAATGCTGGCCTGAAT
CCCATCTCTACTGTAACAGAGCTAAGAAACCGCCATGCCCAAGGAGAAAAAACTACAGGC
ATTAATGTCCGAAAGGGTGGGATCTCCAACATTCTGGAGGAAATGGTTGTCCAGCCTCTG
TTGGTGTCAGTCAGTGCGTTGACC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|15928389|gb|AAH14676.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|15928389|gb|AAH14676.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               190-348, + strand, RNAz p=0.688417

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               190-348, + strand, RNAz p=0.688417

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               190-436, gnl|bosTau2|chr11 (40238047-40237801)
               

               
               190-436, gnl|Hg17|chr2 (62011113-62010867)
               

               
               190-436, gnl|Mm7|chr11 (22954162-22954408)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               190-436, gnl|bosTau2|chr11 (40238047-40237801)
               

               
               190-436, gnl|Hg17|chr2 (62011113-62010867)
               

               
               190-436, gnl|Mm7|chr11 (22954162-22954408)

	190-436, gnl\|bosTau2\|chr11 (40238047-40237801)
	190-436, gnl\|Hg17\|chr2 (62011113-62010867)
	190-436, gnl\|Mm7\|chr11 (22954162-22954408)