Non-Coding RNA Search

Ss1.1-Ova2-C0003264_F17.5

Sequence:


               
               GGCAGCCCATGCATGACAGCCTGAATCACAGGAGGAACAGCTCCGTGTGCGAGCCTCGGT
GTCTGCGCGGATCTGAGGAGCTGTGCACGCAGTGTAGCAGGCCAAGGTCTGAGCCACCAC
AGCATTTTTATTTGAGATTTTGATAACTGTTTGTATGTGTTGAAAACCAAAATGACATCT
TTTTAAAGCTTGTCCATAAGTAAACATAGATGTCTTTTATAGTGGAATAAAACACGTGGG
GGAAATCATCTATTTTGATGCAGCATTTGATAATGATAAACACCTCACGCCTCACTCTTT
TCAGTGCGCAGGACGGATGAGGTCTGGGCTGGGTAGACGAAGGCAATGCTGTTTTTGTTT
TCTTTAGGACCATTCCCTTTTACCAGCTTTTAACCGTCTGATACCCGTGGTAGGCACACT
ATCCTAGTTAACATAGTTATGTTCCGCACTTGTCTCATTTAATGTAAAGATCTGCATTTT
CTACAGGCAGTTTCCTCCCCACAATCCCACTGTGCAGGTGCTACTGTTGCTCTCACAATA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGCCCATGCATGACAGCCTGAATCACAGGAGGAACAGCTCCGTGTGCGAGCCTCGGT
GTCTGCGCGGATCTGAGGAGCTGTGCACGCAGTGTAGCAGGCCAAGGTCTGAGCCACCAC
AGCATTTTTATTTGAGATTTTGATAACTGTTTGTATGTGTTGAAAACCAAAATGACATCT
TTTTAAAGCTTGTCCATAAGTAAACATAGATGTCTTTTATAGTGGAATAAAACACGTGGG
GGAAATCATCTATTTTGATGCAGCATTTGATAATGATAAACACCTCACGCCTCACTCTTT
TCAGTGCGCAGGACGGATGAGGTCTGGGCTGGGTAGACGAAGGCAATGCTGTTTTTGTTT
TCTTTAGGACCATTCCCTTTTACCAGCTTTTAACCGTCTGATACCCGTGGTAGGCACACT
ATCCTAGTTAACATAGTTATGTTCCGCACTTGTCTCATTTAATGTAAAGATCTGCATTTT
CTACAGGCAGTTTCCTCCCCACAATCCCACTGTGCAGGTGCTACTGTTGCTCTCACAATA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               246-354, + strand, RNAz p=0.785085

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               246-354, + strand, RNAz p=0.785085

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_005962, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_005962, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               50-533, gnl|bosTau2|chr26 (19433612-19433117)
               

               
               50-533, gnl|Hg17|chr10 (112035547-112036040)
               

               
               50-533, gnl|Mm7|chr19 (53274397-53274883)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               50-533, gnl|bosTau2|chr26 (19433612-19433117)
               

               
               50-533, gnl|Hg17|chr10 (112035547-112036040)
               

               
               50-533, gnl|Mm7|chr19 (53274397-53274883)

	50-533, gnl\|bosTau2\|chr26 (19433612-19433117)
	50-533, gnl\|Hg17\|chr10 (112035547-112036040)
	50-533, gnl\|Mm7\|chr19 (53274397-53274883)