Ss1.1-Ova2-C0003265_D11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGTCTGCAGCCATGAGTATGCTTAGGCTACAGAAGAGGCTTGCCTCTAGCGTCCTCCGC TGTGGTAAAAAGAAGGTGTGGTTGGACCCCAATGAAACCAACGAAATCGCCAATGCCAAC TCTCGTCAACAGATCAGGAAGCTGATCAAAGATGGCCTGATCATCCGGAAGCCTGTGACT GTCCATTCCCGGGCTCGATGCCGGAAGAACACCTTGGCCCGACGGAAGGGCAGGCATATG GGCATAGGGAAGAGGAAGGGTACTGCCAACGCTCGGATGCCCGAGAAGGTGACCTGGATG CGAAGGATGAGGATCCTGCGCCGGCTTCTCAGGAGATACCGGGAATCTAAGAAGATTGAC CGTCATATGTATCACAGCCTGTACCTGAAGGTCAAAGGGAATGTGTTCAAAAACAAGCGG ATTCTCATGGAGCACATCCACAAACTGAAGGCAGACAAGGCCCGCAAGAAGCTACTGGCT GACCAGGCTGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGTCTGCAGCCATGAGTATGCTTAGGCTACAGAAGAGGCTTGCCTCTAGCGTCCTCCGC TGTGGTAAAAAGAAGGTGTGGTTGGACCCCAATGAAACCAACGAAATCGCCAATGCCAAC TCTCGTCAACAGATCAGGAAGCTGATCAAAGATGGCCTGATCATCCGGAAGCCTGTGACT GTCCATTCCCGGGCTCGATGCCGGAAGAACACCTTGGCCCGACGGAAGGGCAGGCATATG GGCATAGGGAAGAGGAAGGGTACTGCCAACGCTCGGATGCCCGAGAAGGTGACCTGGATG CGAAGGATGAGGATCCTGCGCCGGCTTCTCAGGAGATACCGGGAATCTAAGAAGATTGAC CGTCATATGTATCACAGCCTGTACCTGAAGGTCAAAGGGAATGTGTTCAAAAACAAGCGG ATTCTCATGGAGCACATCCACAAACTGAAGGCAGACAAGGCCCGCAAGAAGCTACTGGCT GACCAGGCTGAG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 123-492, - strand, RNAz p=0.821935 | |
| 127-245, + strand, RNAz p=0.800864 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 123-492, - strand, RNAz p=0.821935 | |
| 127-245, + strand, RNAz p=0.800864 |
| Aligned organism(s): 31 entry(ies) | More info |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
| 5-265, gnl|bosTau2|chr3 (67819726-67819465) | |
| 5-265, gnl|Hg17|chr7 (102376345-102376087) | |
| 5-265, gnl|Mm7|chr8 (19469681-19469941) | |
| 127-252, gnl|bosTau2|chr19 (34769171-34769046) | |
| 127-252, gnl|canFam2|chr9 (26500987-26500857) | |
| 127-252, gnl|danRer3|chr3 (6212633-6212761) | |
| 127-252, gnl|dasNov1|scaffold_14644 (38440-38570) | |
| 127-252, gnl|echTel1|scaffold_322919 (22090-22220) | |
| 127-252, gnl|fr1|chrUn (43115812-43115942) | |
| 127-252, gnl|galGal2|chr27 (2616123-2616252) | |
| 127-252, gnl|hg17|chr17 (34612094-34612224) | |
| 127-252, gnl|Hg17|chr17 (34612098-34612223) | |
| 127-252, gnl|loxAfr1|scaffold_3686 (20307-20177) | |
| 127-252, gnl|mm7|chr11 (98137383-98137513) | |
| 127-252, gnl|Mm7|chr11 (98137387-98137512) | |
| 127-252, gnl|monDom2|scaffold_18 (48167097-48167224) | |
| 127-252, gnl|oryCun1|scaffold_184071 (11337-11217) | |
| 127-252, gnl|panTro1|chr19 (37847028-37847158) | |
| 127-252, gnl|rheMac2|chr16 (49277350-49277480) | |
| 127-252, gnl|rn3|chr10 (86804537-86804664) | |
| 127-252, gnl|tetNig1|chr2_random (161870-162000) | |
| 127-252, gnl|xenTro1|scaffold_334 (280723-280596) | |
| 268-492, gnl|bosTau2|chr3 (67819261-67819037) | |
| 268-492, gnl|Hg17|chr7 (102376081-102375858) | |
| 268-492, gnl|Mm7|chr8 (19469945-19470168) | |
| 278-489, gnl|bosTau2|chr1 (11075285-11075493) | |
| 278-489, gnl|Hg17|chr7 (102376072-102375862) | |
| 278-489, gnl|Mm7|chrX (4546051-4546261) | |
| 346-479, gnl|bosTau2|chr19 (34767974-34767840) | |
| 346-479, gnl|Hg17|chr17 (34613833-34613966) | |
| 346-479, gnl|Mm7|chr11 (98138798-98138924) |
| Aligned organism(s): 31 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 5-265, gnl|bosTau2|chr3 (67819726-67819465) | |
| 5-265, gnl|Hg17|chr7 (102376345-102376087) | |
| 5-265, gnl|Mm7|chr8 (19469681-19469941) | |
| 127-252, gnl|bosTau2|chr19 (34769171-34769046) | |
| 127-252, gnl|canFam2|chr9 (26500987-26500857) | |
| 127-252, gnl|danRer3|chr3 (6212633-6212761) | |
| 127-252, gnl|dasNov1|scaffold_14644 (38440-38570) | |
| 127-252, gnl|echTel1|scaffold_322919 (22090-22220) | |
| 127-252, gnl|fr1|chrUn (43115812-43115942) | |
| 127-252, gnl|galGal2|chr27 (2616123-2616252) | |
| 127-252, gnl|hg17|chr17 (34612094-34612224) | |
| 127-252, gnl|Hg17|chr17 (34612098-34612223) | |
| 127-252, gnl|loxAfr1|scaffold_3686 (20307-20177) | |
| 127-252, gnl|mm7|chr11 (98137383-98137513) | |
| 127-252, gnl|Mm7|chr11 (98137387-98137512) | |
| 127-252, gnl|monDom2|scaffold_18 (48167097-48167224) | |
| 127-252, gnl|oryCun1|scaffold_184071 (11337-11217) | |
| 127-252, gnl|panTro1|chr19 (37847028-37847158) | |
| 127-252, gnl|rheMac2|chr16 (49277350-49277480) | |
| 127-252, gnl|rn3|chr10 (86804537-86804664) | |
| 127-252, gnl|tetNig1|chr2_random (161870-162000) | |
| 127-252, gnl|xenTro1|scaffold_334 (280723-280596) | |
| 268-492, gnl|bosTau2|chr3 (67819261-67819037) | |
| 268-492, gnl|Hg17|chr7 (102376081-102375858) | |
| 268-492, gnl|Mm7|chr8 (19469945-19470168) | |
| 278-489, gnl|bosTau2|chr1 (11075285-11075493) | |
| 278-489, gnl|Hg17|chr7 (102376072-102375862) | |
| 278-489, gnl|Mm7|chrX (4546051-4546261) | |
| 346-479, gnl|bosTau2|chr19 (34767974-34767840) | |
| 346-479, gnl|Hg17|chr17 (34613833-34613966) | |
| 346-479, gnl|Mm7|chr11 (98138798-98138924) |