Non-Coding RNA Search

Ss1.1-Ova2-C0003265_D15.5

Sequence:


               
               GCAACTGGAACCCGGACGGCCGGCACGATGTTGGGCGCGAGCCGCGGGTGAGCGGGTCTG
ACGCTGCTGGGGCTGCTGCTGGCGCTCTCGGTGCGGAGCGGTGGCGCGTCAAAGGCCAGC
GCCGGGCTAGTGACCTGCGGGTCACTGCTGAAGCTACTCAACACCCACCGCAGAGTGCGG
CTGAACTCACATGACATCAAATACGGATCCGGCAGCGGCCAACAGTCGGTAACCGGCGTG
GAGGCGTCCGACGATGCCAATAGTTACTGGCGGATTCGCGGCGGCTCCGAGGGTGGGTGC
CCGCGCGGGCTCCCAGTGCGCTGTGGGCAGGCAGTGCGGCTCACGCACGTGCTCACCGGC
AAGAACCTGCACACGCACCACTTCCCGTCACCGCTATCCAACAACCAGGAGGTGAGTGCT
TTTGGGGAAGACGGTGAGGGTGATGACCTGGACCTGTGGACAGTACGATGTTCTGGGCAA
CACTGGGAGCGAGAGGCCAGTGTCCGTTTCCAGCATGTTGGCACCTCTGTGTTCCTGTCA
GTTACTGGTGAACAGTATGGTAACCCAATCCGTGGGCAGCATGAGGTGCATGGCATGCCT
AGTGCCAATGCACACAACACGTGGAAGGCCATGGAAGGAATCTTCATCAAGCCCGGAGCA
GATCCCTCCACAGGTCACGATGAACTCTGAGCCGGATGGGAAGGGAGGCTGGCTGAGTGG
GAATCCGCACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCAACTGGAACCCGGACGGCCGGCACGATGTTGGGCGCGAGCCGCGGGTGAGCGGGTCTG
ACGCTGCTGGGGCTGCTGCTGGCGCTCTCGGTGCGGAGCGGTGGCGCGTCAAAGGCCAGC
GCCGGGCTAGTGACCTGCGGGTCACTGCTGAAGCTACTCAACACCCACCGCAGAGTGCGG
CTGAACTCACATGACATCAAATACGGATCCGGCAGCGGCCAACAGTCGGTAACCGGCGTG
GAGGCGTCCGACGATGCCAATAGTTACTGGCGGATTCGCGGCGGCTCCGAGGGTGGGTGC
CCGCGCGGGCTCCCAGTGCGCTGTGGGCAGGCAGTGCGGCTCACGCACGTGCTCACCGGC
AAGAACCTGCACACGCACCACTTCCCGTCACCGCTATCCAACAACCAGGAGGTGAGTGCT
TTTGGGGAAGACGGTGAGGGTGATGACCTGGACCTGTGGACAGTACGATGTTCTGGGCAA
CACTGGGAGCGAGAGGCCAGTGTCCGTTTCCAGCATGTTGGCACCTCTGTGTTCCTGTCA
GTTACTGGTGAACAGTATGGTAACCCAATCCGTGGGCAGCATGAGGTGCATGGCATGCCT
AGTGCCAATGCACACAACACGTGGAAGGCCATGGAAGGAATCTTCATCAAGCCCGGAGCA
GATCCCTCCACAGGTCACGATGAACTCTGAGCCGGATGGGAAGGGAGGCTGGCTGAGTGG
GAATCCGCACGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               SDF2L_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               SDF2L_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               565-684, + strand, RNAz p=0.747731

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               565-684, + strand, RNAz p=0.747731

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               17-212, gnl|bosTau2|chr17 (45428291-45428490)
               

               
               17-212, gnl|Hg17|chr22 (20321169-20321367)
               

               
               17-212, gnl|Mm7|chr16 (16682058-16681856)
               


               
               406-691, gnl|bosTau2|chr17 (45429766-45430051)
               

               
               406-691, gnl|Hg17|chr22 (20322734-20323019)
               

               
               406-691, gnl|Mm7|chr16 (16680522-16680239)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               17-212, gnl|bosTau2|chr17 (45428291-45428490)
               

               
               17-212, gnl|Hg17|chr22 (20321169-20321367)
               

               
               17-212, gnl|Mm7|chr16 (16682058-16681856)
               


               
               406-691, gnl|bosTau2|chr17 (45429766-45430051)
               

               
               406-691, gnl|Hg17|chr22 (20322734-20323019)
               

               
               406-691, gnl|Mm7|chr16 (16680522-16680239)

	17-212, gnl\|bosTau2\|chr17 (45428291-45428490)
	17-212, gnl\|Hg17\|chr22 (20321169-20321367)
	17-212, gnl\|Mm7\|chr16 (16682058-16681856)

	406-691, gnl\|bosTau2\|chr17 (45429766-45430051)
	406-691, gnl\|Hg17\|chr22 (20322734-20323019)
	406-691, gnl\|Mm7\|chr16 (16680522-16680239)