Non-Coding RNA Search

Ss1.1-Ova2-C0003265_F16.5

Sequence:


               
               CCGCGGTGGCGGCCGCGGCTCGAGCACAAACTCAGAAACAGACACCATGGTGCACCTGAC
TGATGCTGAGAAGGCTGCTGTTAATGGCCTGTGGGGAAAGGTGAACCCTGATGATGTTGG
TGGCGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGAGGTACTTTGATAG
CTTTGGGGACCTGTCCTCTGCCTCTGCTATCATGGGTAACCCTAAGGTGAAGGCCCATGG
CAAGAAGGTGATAAACGCCTTCAATGATGGCCTGAAACACTTGGACAACCTCAAGGGCAC
CTTTGCTCATCTGAGTGAACTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAG
GCTCCTGGGCAATATGATTGTGATTGTGTTGGGCCACCACCTGGGCAAGGAATTCACCCC
CTGTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCAGTGCCCTGGCTCACAA
GTACCACTAAACCTCTTTTCCTGCTCTTGTCTTTGTGCAATGGTCAATTGTCCCCAGAGA
GCATCTGTCAGTTGTTGTCAAATG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCGCGGTGGCGGCCGCGGCTCGAGCACAAACTCAGAAACAGACACCATGGTGCACCTGAC
TGATGCTGAGAAGGCTGCTGTTAATGGCCTGTGGGGAAAGGTGAACCCTGATGATGTTGG
TGGCGAGGCCCTGGGCAGGCTGCTGGTTGTCTACCCTTGGACCCAGAGGTACTTTGATAG
CTTTGGGGACCTGTCCTCTGCCTCTGCTATCATGGGTAACCCTAAGGTGAAGGCCCATGG
CAAGAAGGTGATAAACGCCTTCAATGATGGCCTGAAACACTTGGACAACCTCAAGGGCAC
CTTTGCTCATCTGAGTGAACTCCACTGTGACAAGCTGCATGTGGATCCTGAGAACTTCAG
GCTCCTGGGCAATATGATTGTGATTGTGTTGGGCCACCACCTGGGCAAGGAATTCACCCC
CTGTGCACAGGCTGCCTTCCAGAAGGTGGTGGCTGGAGTGGCCAGTGCCCTGGCTCACAA
GTACCACTAAACCTCTTTTCCTGCTCTTGTCTTTGTGCAATGGTCAATTGTCCCCAGAGA
GCATCTGTCAGTTGTTGTCAAATG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|17985949|ref|NP_150237.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|17985949|ref|NP_150237.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               176-295, + strand, RNAz p=0.66044

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               176-295, + strand, RNAz p=0.66044

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               137-361, gnl|bosTau2|chr15 (31619929-31620153)
               

               
               137-361, gnl|Hg17|chr11 (5204607-5204383)
               

               
               137-361, gnl|Mm7|chr7 (99864481-99864258)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               137-361, gnl|bosTau2|chr15 (31619929-31620153)
               

               
               137-361, gnl|Hg17|chr11 (5204607-5204383)
               

               
               137-361, gnl|Mm7|chr7 (99864481-99864258)

	137-361, gnl\|bosTau2\|chr15 (31619929-31620153)
	137-361, gnl\|Hg17\|chr11 (5204607-5204383)
	137-361, gnl\|Mm7\|chr7 (99864481-99864258)