Non-Coding RNA Search

Ss1.1-Ova2-C0003272_A23.5

Sequence:


               
               GTTTCGGCTCTGTGGCTTTTCTGTTTACGATCCGTACCCATCCGAGGAGCTAGGCAGGCG
GGACGCCCTCGGGGTCGGTGCTGTAGCTGGGGTTAGTGGTGAGGGACGAGGAGAGGTGCA
TACCGGGCGGGTGGTCCGCTCGTAGTTTCGGAAAGCCCTCGATCGAACCAGCGCGTCCGA
AGAGGCACTCAGGATGGTCCAGCGTTTGACATACCGTCGTAGGCTTTCCTACAATACAGC
CTCTAACAAAACTAGGCTGTCTCGAACCCCTGGCAACAGGATCGTTTACCTTTACACCAA
GAAGGTCGGGAAAGCACCTAAATCCGCATGTGGCGTGTGCCCAGGCAGACTGCGAGGGGT
CCGTGCTGTGAGACCCAAAGTCCTCATGAGATTGTCCAAGACAAAGAAGCACGTCAGCAG
GGCCTATGGTGGCTCCATGTGCGCCAAGTGTGTCCGGGACAGGATCAAGCGGGCTTTCCT
TATCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGC
AAAATAAATGGGCAGCTTTTTTAAGTAATAAAAATCAAGACTTCGTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTTCGGCTCTGTGGCTTTTCTGTTTACGATCCGTACCCATCCGAGGAGCTAGGCAGGCG
GGACGCCCTCGGGGTCGGTGCTGTAGCTGGGGTTAGTGGTGAGGGACGAGGAGAGGTGCA
TACCGGGCGGGTGGTCCGCTCGTAGTTTCGGAAAGCCCTCGATCGAACCAGCGCGTCCGA
AGAGGCACTCAGGATGGTCCAGCGTTTGACATACCGTCGTAGGCTTTCCTACAATACAGC
CTCTAACAAAACTAGGCTGTCTCGAACCCCTGGCAACAGGATCGTTTACCTTTACACCAA
GAAGGTCGGGAAAGCACCTAAATCCGCATGTGGCGTGTGCCCAGGCAGACTGCGAGGGGT
CCGTGCTGTGAGACCCAAAGTCCTCATGAGATTGTCCAAGACAAAGAAGCACGTCAGCAG
GGCCTATGGTGGCTCCATGTGCGCCAAGTGTGTCCGGGACAGGATCAAGCGGGCTTTCCT
TATCGAGGAGCAGAAAATCGTTGTGAAAGTGTTGAAGGCACAAGCACAGAGTCAGAAAGC
AAAATAAATGGGCAGCTTTTTTAAGTAATAAAAATCAAGACTTCGTCT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6FG66_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6FG66_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               181-339, - strand, RNAz p=0.656416

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               181-339, - strand, RNAz p=0.656416

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               181-574, gnl|bosTau2|chr16 (37509180-37509575)
               

               
               181-574, gnl|Hg17|chr8 (95039108-95038717)
               

               
               181-574, gnl|Mm7|chr6 (71142598-71142991)
               


               
               267-482, gnl|bosTau2|chr11 (34658595-34658810)
               

               
               267-482, gnl|Hg17|chr13 (49833827-49833612)
               

               
               267-482, gnl|Mm7|chr4 (82909191-82908976)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               181-574, gnl|bosTau2|chr16 (37509180-37509575)
               

               
               181-574, gnl|Hg17|chr8 (95039108-95038717)
               

               
               181-574, gnl|Mm7|chr6 (71142598-71142991)
               


               
               267-482, gnl|bosTau2|chr11 (34658595-34658810)
               

               
               267-482, gnl|Hg17|chr13 (49833827-49833612)
               

               
               267-482, gnl|Mm7|chr4 (82909191-82908976)

	181-574, gnl\|bosTau2\|chr16 (37509180-37509575)
	181-574, gnl\|Hg17\|chr8 (95039108-95038717)
	181-574, gnl\|Mm7\|chr6 (71142598-71142991)

	267-482, gnl\|bosTau2\|chr11 (34658595-34658810)
	267-482, gnl\|Hg17\|chr13 (49833827-49833612)
	267-482, gnl\|Mm7\|chr4 (82909191-82908976)