Non-Coding RNA Search

Ss1.1-Ova2-C0003275_G14.5

Sequence:


               
               GGAAGGCGGGGCTGGGGCTCGGCGGGAGGCCACCCCCGCAGCCGCCCCGAGATGAACGCG
CCCAGCAGCTGCTGGACGCCGTGGAACAGCGGCAGCGGCAGCTCCTGGACACCATCGCCG
CCTGCGAGGAGATGCTGCGGCAGCTGGGCCGGCGGCGCCCGGAACCGGCTGGTGGCGGGA
ACGGTTCAGCCAAGTCCGGAGCGTCGCCCCAGCCATCTGTATCCACCAGAGGTGGCCTTC
CAAAGGATGCTGGCGATGGAGCTGCAGAGTCTTGATCATTCCCTATACGGGCACCCTGAC
TTCTGTCCCTTTCCAGGGCCGATGGCTGGACTCTGACCAACTCCCTTCACCAAAAGGGGC
CAGTCTTCACTGGCAGTTGCTGGTACTTGGCCCTCAGCCTGGGATGGCAACTCTACTAAC
AGCTGGGTTCATTCCCACGTCGTCCTGGCTGAAGGCAGTACTGTGCTTTGAATGTAGCCA
ATGAACATCCAGTGTTGAATATTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGAAGGCGGGGCTGGGGCTCGGCGGGAGGCCACCCCCGCAGCCGCCCCGAGATGAACGCG
CCCAGCAGCTGCTGGACGCCGTGGAACAGCGGCAGCGGCAGCTCCTGGACACCATCGCCG
CCTGCGAGGAGATGCTGCGGCAGCTGGGCCGGCGGCGCCCGGAACCGGCTGGTGGCGGGA
ACGGTTCAGCCAAGTCCGGAGCGTCGCCCCAGCCATCTGTATCCACCAGAGGTGGCCTTC
CAAAGGATGCTGGCGATGGAGCTGCAGAGTCTTGATCATTCCCTATACGGGCACCCTGAC
TTCTGTCCCTTTCCAGGGCCGATGGCTGGACTCTGACCAACTCCCTTCACCAAAAGGGGC
CAGTCTTCACTGGCAGTTGCTGGTACTTGGCCCTCAGCCTGGGATGGCAACTCTACTAAC
AGCTGGGTTCATTCCCACGTCGTCCTGGCTGAAGGCAGTACTGTGCTTTGAATGTAGCCA
ATGAACATCCAGTGTTGAATATTC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|55586838|ref|XP_530118.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|55586838|ref|XP_530118.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               258-485, + strand, RNAz p=0.991142
               

               
               358-468, + strand, RNAz p=0.707291

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               258-485, + strand, RNAz p=0.991142
               

               
               358-468, + strand, RNAz p=0.707291

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               3' of NM_198446, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               3' of NM_198446, +

Aligned organism(s): 12 entry(ies)

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Aligned organism(s): 12 entry(ies)

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               179-485, gnl|bosTau2|chr3 (75290431-75290124)
               

               
               179-485, gnl|canFam2|chr15 (7727937-7727338)
               

               
               179-485, gnl|dasNov1|scaffold_20843 (16241-16841)
               

               
               179-485, gnl|echTel1|scaffold_319920 (828-240)
               

               
               179-485, gnl|hg17|chr1 (37943638-37944237)
               

               
               179-485, gnl|Hg17|chr1 (37943742-37944044)
               

               
               179-485, gnl|loxAfr1|scaffold_7945 (50803-51406)
               

               
               179-485, gnl|mm7|chr4 (124294722-124294120)
               

               
               179-485, gnl|Mm7|chr4 (124294610-124294306)
               

               
               179-485, gnl|panTro1|chr1 (38785707-38786306)
               

               
               179-485, gnl|rheMac2|chr1 (40677958-40678561)
               

               
               179-485, gnl|rn3|chr5 (144192890-144192291)

Aligned organism(s): 12 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               179-485, gnl|bosTau2|chr3 (75290431-75290124)
               

               
               179-485, gnl|canFam2|chr15 (7727937-7727338)
               

               
               179-485, gnl|dasNov1|scaffold_20843 (16241-16841)
               

               
               179-485, gnl|echTel1|scaffold_319920 (828-240)
               

               
               179-485, gnl|hg17|chr1 (37943638-37944237)
               

               
               179-485, gnl|Hg17|chr1 (37943742-37944044)
               

               
               179-485, gnl|loxAfr1|scaffold_7945 (50803-51406)
               

               
               179-485, gnl|mm7|chr4 (124294722-124294120)
               

               
               179-485, gnl|Mm7|chr4 (124294610-124294306)
               

               
               179-485, gnl|panTro1|chr1 (38785707-38786306)
               

               
               179-485, gnl|rheMac2|chr1 (40677958-40678561)
               

               
               179-485, gnl|rn3|chr5 (144192890-144192291)

	258-485, + strand, RNAz p=0.991142
	358-468, + strand, RNAz p=0.707291

	179-485, gnl\|bosTau2\|chr3 (75290431-75290124)
	179-485, gnl\|canFam2\|chr15 (7727937-7727338)
	179-485, gnl\|dasNov1\|scaffold_20843 (16241-16841)
	179-485, gnl\|echTel1\|scaffold_319920 (828-240)
	179-485, gnl\|hg17\|chr1 (37943638-37944237)
	179-485, gnl\|Hg17\|chr1 (37943742-37944044)
	179-485, gnl\|loxAfr1\|scaffold_7945 (50803-51406)
	179-485, gnl\|mm7\|chr4 (124294722-124294120)
	179-485, gnl\|Mm7\|chr4 (124294610-124294306)
	179-485, gnl\|panTro1\|chr1 (38785707-38786306)
	179-485, gnl\|rheMac2\|chr1 (40677958-40678561)
	179-485, gnl\|rn3\|chr5 (144192890-144192291)