Non-Coding RNA Search

Ss1.1-Ova2-C0003276_B15.5

Sequence:


               
               TGCGTCCCCGCGTGTGTGCGCCTTATCTCAGCTGGTCTGCCCGAGACCCCCTGAGCGTGA
ACCTTAGTCCCCCGCGCGGCCCCATTTCCACTCCGACAAGATGAAAGAAACGATCATGAA
CCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCG
TAGAAAGAAGAAGGTGGTTCACAGAACAGCCACAGCAGACGATAAAAAACTGCAGTTCTC
CTTAAAGAAGTTAGGGGTAAACAATATCTCTGGTATTGAAGAGGTGAACATGTTTACAAA
CCAAGGAACAGTGATCCATTTTAACAACCCTAAAGTTCAGGCGTCTTTGGCAGCAAACAC
CTTCACCATTACAGGCCACGCCGAGACAAAGCAGCTGACAGAAATGCTTCCCAGCATCCT
CAACCAGCTTGGTGCAGACAGTCTGACCAGTTTGAGGAGACTGGCTGAAGCTCTGCCCAA
ACAATCTGTGGATGGAAAAGCACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGCGTCCCCGCGTGTGTGCGCCTTATCTCAGCTGGTCTGCCCGAGACCCCCTGAGCGTGA
ACCTTAGTCCCCCGCGCGGCCCCATTTCCACTCCGACAAGATGAAAGAAACGATCATGAA
CCAGGAAAAACTCGCCAAACTGCAGGCACAAGTGCGCATTGGTGGGAAAGGAACTGCTCG
TAGAAAGAAGAAGGTGGTTCACAGAACAGCCACAGCAGACGATAAAAAACTGCAGTTCTC
CTTAAAGAAGTTAGGGGTAAACAATATCTCTGGTATTGAAGAGGTGAACATGTTTACAAA
CCAAGGAACAGTGATCCATTTTAACAACCCTAAAGTTCAGGCGTCTTTGGCAGCAAACAC
CTTCACCATTACAGGCCACGCCGAGACAAAGCAGCTGACAGAAATGCTTCCCAGCATCCT
CAACCAGCTTGGTGCAGACAGTCTGACCAGTTTGAGGAGACTGGCTGAAGCTCTGCCCAA
ACAATCTGTGGATGGAAAAGCACCACTTGCTACTGGAGAGGATGATGATGATGAAGTTCC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|28189635|dbj|BAC56432.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|28189635|dbj|BAC56432.1|

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               120-239, - strand, RNAz p=0.552932
               

               
               125-531, - strand, RNAz p=0.798034

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-239, - strand, RNAz p=0.552932
               

               
               125-531, - strand, RNAz p=0.798034

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               1-539, gnl|bosTau2|chr28 (22301008-22301537)
               

               
               1-539, gnl|Hg17|chr3 (102659363-102658819)
               

               
               1-539, gnl|Mm7|chr1 (97801570-97801026)
               


               
               8-531, gnl|bosTau2|chr14 (40263538-40264063)
               

               
               8-531, gnl|Hg17|chr3 (102659356-102658830)
               

               
               8-531, gnl|Mm7|chr1 (97801563-97801037)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-539, gnl|bosTau2|chr28 (22301008-22301537)
               

               
               1-539, gnl|Hg17|chr3 (102659363-102658819)
               

               
               1-539, gnl|Mm7|chr1 (97801570-97801026)
               


               
               8-531, gnl|bosTau2|chr14 (40263538-40264063)
               

               
               8-531, gnl|Hg17|chr3 (102659356-102658830)
               

               
               8-531, gnl|Mm7|chr1 (97801563-97801037)

	120-239, - strand, RNAz p=0.552932
	125-531, - strand, RNAz p=0.798034

	1-539, gnl\|bosTau2\|chr28 (22301008-22301537)
	1-539, gnl\|Hg17\|chr3 (102659363-102658819)
	1-539, gnl\|Mm7\|chr1 (97801570-97801026)

	8-531, gnl\|bosTau2\|chr14 (40263538-40264063)
	8-531, gnl\|Hg17\|chr3 (102659356-102658830)
	8-531, gnl\|Mm7\|chr1 (97801563-97801037)