Non-Coding RNA Search

Ss1.1-Ova2-C0003277_G05.5

Sequence:


               
               GCGGCTCGAGAGATGGGACTGTGTACATTGGAGACGCACACACAAACACCGTGTGGAAGT
TCACCCAGGACTGAAAAAATGGAGCATCGGTCAGTTAAAAAGGCTGGCATTGAAGTCCAG
GAAATCAAAGGAAAGGGAAGCGGCGGCTTAAATCTGGGAAATTTCTTTGCAAGTCGAAAA
GGCTACAGCAGAAAAGGGTTTGACCGAGTGAGCACAGAGGGGAGTGACCAAGAGAAAGAT
GAGGACGACGGAAGTGAGTCTGAAGAGGAGTACTCGGCCCCGCTGCCCAAGCCTGCACCT
TCCTCCTGAGCTCCAGCCTTCGCCCGGGTAGCTGGACTGAGGTTTACCAGGATGCCCAGA
CTCCTTCCCCTTTAGCGCGTGTAAAGTTCTGTGCATTTGATTGTAAACTGTACTCGTCAG
TGTGGGACTGTACACACCTTATTTACTTCATTTGGCTCCGTTGGCTTCTGTTTTCTAGGT
GAGGAGTTCCCCACCAGTTCACTCCAGTGCCATTGTCTTTATATGAACTTAGCGTAGAGA
AGCCGCCCTCCTCTTCCAAGGTAGCGCTCCAACCCCCGAGGGAAGTTTAGCTCATTCACA
TTTGGAGACGTTTTAGTTGGTGGATGTAAATAGCCCTATTCTCTGCTTGAACACAGTATT
CTCCCAGTCCACACCCATCGCCAGTGTCTTTCTTTGGTGCCTTTCCTGTTCAGCATTCTC
AGCCTGTGGCAGAGAAGAGAACCAACCTGCCACACGACGAAAAGCTGCTAAATCTCCTTC
TATTTTTTTAAAATCACTAACATTATATTGCAATGAGAGAAATTTTAAAAAGTCTCTATT
TAAATTCTTTTTATTAAATTCTCCTCAGTTGGTGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCTCGAGAGATGGGACTGTGTACATTGGAGACGCACACACAAACACCGTGTGGAAGT
TCACCCAGGACTGAAAAAATGGAGCATCGGTCAGTTAAAAAGGCTGGCATTGAAGTCCAG
GAAATCAAAGGAAAGGGAAGCGGCGGCTTAAATCTGGGAAATTTCTTTGCAAGTCGAAAA
GGCTACAGCAGAAAAGGGTTTGACCGAGTGAGCACAGAGGGGAGTGACCAAGAGAAAGAT
GAGGACGACGGAAGTGAGTCTGAAGAGGAGTACTCGGCCCCGCTGCCCAAGCCTGCACCT
TCCTCCTGAGCTCCAGCCTTCGCCCGGGTAGCTGGACTGAGGTTTACCAGGATGCCCAGA
CTCCTTCCCCTTTAGCGCGTGTAAAGTTCTGTGCATTTGATTGTAAACTGTACTCGTCAG
TGTGGGACTGTACACACCTTATTTACTTCATTTGGCTCCGTTGGCTTCTGTTTTCTAGGT
GAGGAGTTCCCCACCAGTTCACTCCAGTGCCATTGTCTTTATATGAACTTAGCGTAGAGA
AGCCGCCCTCCTCTTCCAAGGTAGCGCTCCAACCCCCGAGGGAAGTTTAGCTCATTCACA
TTTGGAGACGTTTTAGTTGGTGGATGTAAATAGCCCTATTCTCTGCTTGAACACAGTATT
CTCCCAGTCCACACCCATCGCCAGTGTCTTTCTTTGGTGCCTTTCCTGTTCAGCATTCTC
AGCCTGTGGCAGAGAAGAGAACCAACCTGCCACACGACGAAAAGCTGCTAAATCTCCTTC
TATTTTTTTAAAATCACTAACATTATATTGCAATGAGAGAAATTTTAAAAAGTCTCTATT
TAAATTCTTTTTATTAAATTCTCCTCAGTTGGTGTG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               524-619, - strand, RNAz p=0.554662

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               524-619, - strand, RNAz p=0.554662

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               129-876, gnl|bosTau2|chr7 (64847057-64847798)
               

               
               129-876, gnl|Hg17|chr5 (102392488-102393223)
               

               
               129-876, gnl|Mm7|chr1 (97674186-97673387)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               129-876, gnl|bosTau2|chr7 (64847057-64847798)
               

               
               129-876, gnl|Hg17|chr5 (102392488-102393223)
               

               
               129-876, gnl|Mm7|chr1 (97674186-97673387)

	129-876, gnl\|bosTau2\|chr7 (64847057-64847798)
	129-876, gnl\|Hg17\|chr5 (102392488-102393223)
	129-876, gnl\|Mm7\|chr1 (97674186-97673387)