Non-Coding RNA Search

Ss1.1-OvaF-UMC-pfeto1-021-f12.3

Sequence:


               
               CTTGCTCAGCTGAGGACTGATACAACCGGCGAGAGCCCCACGTGCATGGGACCTCCTGTG
CGCACCCCAAGAGCCGGAAGCAGAACCACCTGCCCAAAGTCCTGCACCCCAGCAACCCCC
ACATCAGCAGTGGCTCCACAGTGGCCACCTGCCTGAGCCAGGGGGGCCTCCTGGAAGACC
TGGACAACCTCATTCTGGAGGACCTGAAGGAGGAGGAGGAGGAGGAGGAGGGTGGGCATG
GGGAGTGACCCCTGCCAGGTGCAGATGCAAACCAGACACGGTCTGTGGATACTTTGTGTT
GTTATAAAATGTGAGCTCAAACGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTGCTCAGCTGAGGACTGATACAACCGGCGAGAGCCCCACGTGCATGGGACCTCCTGTG
CGCACCCCAAGAGCCGGAAGCAGAACCACCTGCCCAAAGTCCTGCACCCCAGCAACCCCC
ACATCAGCAGTGGCTCCACAGTGGCCACCTGCCTGAGCCAGGGGGGCCTCCTGGAAGACC
TGGACAACCTCATTCTGGAGGACCTGAAGGAGGAGGAGGAGGAGGAGGAGGGTGGGCATG
GGGAGTGACCCCTGCCAGGTGCAGATGCAAACCAGACACGGTCTGTGGATACTTTGTGTT
GTTATAAAATGTGAGCTCAAACGG

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q8N1H8_HUMAN

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q8N1H8_HUMAN

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               151-322, - strand, RNAz p=0.995391

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               151-322, - strand, RNAz p=0.995391

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_031917, -

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_031917, -

Aligned organism(s): 14 entry(ies)

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Aligned organism(s): 14 entry(ies)

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               32-322, gnl|bosTau2|chr7 (9690425-9690120)
               

               
               32-322, gnl|canFam2|chr20 (53964907-53964670)
               

               
               32-322, gnl|danRer3|chrUn (56004728-56004526)
               

               
               32-322, gnl|echTel1|scaffold_301152 (175-396)
               

               
               32-322, gnl|hg17|chr19 (10063712-10063964)
               

               
               32-322, gnl|Hg17|chr19 (10063744-10064052)
               

               
               32-322, gnl|loxAfr1|scaffold_88580 (7865-7616)
               

               
               32-322, gnl|mm7|chr9 (20750078-20750313)
               

               
               32-322, gnl|Mm7|chr9 (20750096-20750401)
               

               
               32-322, gnl|monDom2|scaffold_106 (1668697-1668903)
               

               
               32-322, gnl|oryCun1|scaffold_189154 (5586-5830)
               

               
               32-322, gnl|panTro1|chr20 (10431840-10432092)
               

               
               32-322, gnl|rn3|chr8 (19898840-19899070)
               

               
               32-322, gnl|xenTro1|scaffold_56 (2285341-2285112)

Aligned organism(s): 14 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-322, gnl|bosTau2|chr7 (9690425-9690120)
               

               
               32-322, gnl|canFam2|chr20 (53964907-53964670)
               

               
               32-322, gnl|danRer3|chrUn (56004728-56004526)
               

               
               32-322, gnl|echTel1|scaffold_301152 (175-396)
               

               
               32-322, gnl|hg17|chr19 (10063712-10063964)
               

               
               32-322, gnl|Hg17|chr19 (10063744-10064052)
               

               
               32-322, gnl|loxAfr1|scaffold_88580 (7865-7616)
               

               
               32-322, gnl|mm7|chr9 (20750078-20750313)
               

               
               32-322, gnl|Mm7|chr9 (20750096-20750401)
               

               
               32-322, gnl|monDom2|scaffold_106 (1668697-1668903)
               

               
               32-322, gnl|oryCun1|scaffold_189154 (5586-5830)
               

               
               32-322, gnl|panTro1|chr20 (10431840-10432092)
               

               
               32-322, gnl|rn3|chr8 (19898840-19899070)
               

               
               32-322, gnl|xenTro1|scaffold_56 (2285341-2285112)

	32-322, gnl\|bosTau2\|chr7 (9690425-9690120)
	32-322, gnl\|canFam2\|chr20 (53964907-53964670)
	32-322, gnl\|danRer3\|chrUn (56004728-56004526)
	32-322, gnl\|echTel1\|scaffold_301152 (175-396)
	32-322, gnl\|hg17\|chr19 (10063712-10063964)
	32-322, gnl\|Hg17\|chr19 (10063744-10064052)
	32-322, gnl\|loxAfr1\|scaffold_88580 (7865-7616)
	32-322, gnl\|mm7\|chr9 (20750078-20750313)
	32-322, gnl\|Mm7\|chr9 (20750096-20750401)
	32-322, gnl\|monDom2\|scaffold_106 (1668697-1668903)
	32-322, gnl\|oryCun1\|scaffold_189154 (5586-5830)
	32-322, gnl\|panTro1\|chr20 (10431840-10432092)
	32-322, gnl\|rn3\|chr8 (19898840-19899070)
	32-322, gnl\|xenTro1\|scaffold_56 (2285341-2285112)