Non-Coding RNA Search

Ss1.1-OvaN-UMC-pnatal4-011-a08.3

Sequence:


               
               GTCCCAGAGCAGAAGTTCTGCTGGGATCCGCTCCTTCATCAACCCCAGCATGGATGATGC
TAACAGTGCTTCTACCTTCCCCACCCCCCACCCCAGACCTTCGGCTAGCCCTCTCCACCC
TTCCCTGACAATCCTACTTCCCAGCTCTCTCACCCACCAGCAGCTCAGGCCTGGGTGGGA
TCTATCCCCAACTCCTCCCTCTGCAACCTCTTACCTCCACAGACCCATCCTGTGACCTCT
CACCTCCTCTGGCCTCTCCCTCTGCCATTCACATTCTTACTCAAGTCCCTAAGACCCTGA
GGCTGGATGGTGCCACAAGAGAGGAGGGCAAGTTCCCCTCAGGGAACCAAGGAACTAGCT
TGCCTGGCACCCAGGGACAGTAGCTATTTGGCTCTTCACCTGATTTAAAAAAAAAAAAAA
AAAAAAAAGGGGGGGGGCCGTTTAAAATTTTCCTTGGGGGGGCCAAAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCCAGAGCAGAAGTTCTGCTGGGATCCGCTCCTTCATCAACCCCAGCATGGATGATGC
TAACAGTGCTTCTACCTTCCCCACCCCCCACCCCAGACCTTCGGCTAGCCCTCTCCACCC
TTCCCTGACAATCCTACTTCCCAGCTCTCTCACCCACCAGCAGCTCAGGCCTGGGTGGGA
TCTATCCCCAACTCCTCCCTCTGCAACCTCTTACCTCCACAGACCCATCCTGTGACCTCT
CACCTCCTCTGGCCTCTCCCTCTGCCATTCACATTCTTACTCAAGTCCCTAAGACCCTGA
GGCTGGATGGTGCCACAAGAGAGGAGGGCAAGTTCCCCTCAGGGAACCAAGGAACTAGCT
TGCCTGGCACCCAGGGACAGTAGCTATTTGGCTCTTCACCTGATTTAAAAAAAAAAAAAA
AAAAAAAAGGGGGGGGGCCGTTTAAAATTTTCCTTGGGGGGGCCAAAG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-426, - strand, RNAz p=0.999093

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-426, - strand, RNAz p=0.999093

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               269-400, DA899193 SKMUS2 Homo sapiens cDNA clone SKMUS2007695 5', mRNA 
(dbj|DA899193.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               238-348, DB804236 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB804236.1|), blast E-value=0, identity=98.2% 
               

               
               269-400, CT000437 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016K0324 5', 
(emb|CT000437.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               269-400, AGENCOURT_40989161 NIH_MGC_281 Homo sapiens cDNA clone 
(gb|CX761892.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               269-400, HESC3_1_D10.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX780891.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               269-400, HESC4_8_G08.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX866125.1|), blast E-value=7.00005e-41, identity=91.67%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               269-400, DA899193 SKMUS2 Homo sapiens cDNA clone SKMUS2007695 5', mRNA 
(dbj|DA899193.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               238-348, DB804236 full-length enriched swine cDNA library, adult skin Sus 
(dbj|DB804236.1|), blast E-value=0, identity=98.2% 
               

               
               269-400, CT000437 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016K0324 5', 
(emb|CT000437.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               269-400, AGENCOURT_40989161 NIH_MGC_281 Homo sapiens cDNA clone 
(gb|CX761892.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               269-400, HESC3_1_D10.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone 
(gb|CX780891.1|), blast E-value=7.00005e-41, identity=91.67% 
               

               
               269-400, HESC4_8_G08.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone 
(gb|CX866125.1|), blast E-value=7.00005e-41, identity=91.67%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-426, gnl|bosTau2|chr15 (48858429-48858008)
               

               
               1-426, gnl|Hg17|chr11 (47445143-47445548)
               

               
               1-426, gnl|Mm7|chr2 (90869156-90868758)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-426, gnl|bosTau2|chr15 (48858429-48858008)
               

               
               1-426, gnl|Hg17|chr11 (47445143-47445548)
               

               
               1-426, gnl|Mm7|chr2 (90869156-90868758)

	269-400, DA899193 SKMUS2 Homo sapiens cDNA clone SKMUS2007695 5', mRNA (dbj\|DA899193.1\|), blast E-value=7.00005e-41, identity=91.67%
	238-348, DB804236 full-length enriched swine cDNA library, adult skin Sus (dbj\|DB804236.1\|), blast E-value=0, identity=98.2%
	269-400, CT000437 RZPD no.9016 Homo sapiens cDNA clone RZPDp9016K0324 5', (emb\|CT000437.1\|), blast E-value=7.00005e-41, identity=91.67%
	269-400, AGENCOURT_40989161 NIH_MGC_281 Homo sapiens cDNA clone (gb\|CX761892.1\|), blast E-value=7.00005e-41, identity=91.67%
	269-400, HESC3_1_D10.g1_A036 NIH_MGC_260 Homo sapiens cDNA clone (gb\|CX780891.1\|), blast E-value=7.00005e-41, identity=91.67%
	269-400, HESC4_8_G08.g1_A037 NIH_MGC_262 Homo sapiens cDNA clone (gb\|CX866125.1\|), blast E-value=7.00005e-41, identity=91.67%

	1-426, gnl\|bosTau2\|chr15 (48858429-48858008)
	1-426, gnl\|Hg17\|chr11 (47445143-47445548)
	1-426, gnl\|Mm7\|chr2 (90869156-90868758)