Non-Coding RNA Search

Ss1.1-Ovi2-UMC-peov1-007-f02.3

Sequence:


               
               AGATGAGTCAGTTTGACCAGTTTTTTTTCTGGAAGTGAGCTAGTGAAAAGTTTTTTAACA
ACTAAACTCTTAATCTCCTTAGAATTAAGGTTAAAAATTACCTACTTGGTCTAACGTTAA
ACCTAAGGGGTGGTGGATGGGAGGATGAAGGAAATGGAATGAAAGTGTTGAGGGAACTTT
GAAGGTCTTTCCTCGTGTGAAACATGGCACCTATTTCTGTCATAATCTCTGACACAGACC
AGTGTAGAGCCCTGGCTACTGTGAGAAAGCTGTGAATGATGGAGACCACATAAGGAATGA
ATTTTGCTAAAGATGAGATCATTGCATTTGAGAGTTATTCGTGCTCTTTCAGGGTGAAAA
AAAAAAAAATGACTTACCTGATTTGTCCAAAATAAAAATCATTAAACAAAATAAAAGAAG
GTGTGTGGGGGGAAGGTTCAACTTAATTAGGTAAAACTCTTAAAGAGGAGTTCCCATCAT
GGCTCAGTGGAAATGAATCTGACTAGCATCCATGAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               AGATGAGTCAGTTTGACCAGTTTTTTTTCTGGAAGTGAGCTAGTGAAAAGTTTTTTAACA
ACTAAACTCTTAATCTCCTTAGAATTAAGGTTAAAAATTACCTACTTGGTCTAACGTTAA
ACCTAAGGGGTGGTGGATGGGAGGATGAAGGAAATGGAATGAAAGTGTTGAGGGAACTTT
GAAGGTCTTTCCTCGTGTGAAACATGGCACCTATTTCTGTCATAATCTCTGACACAGACC
AGTGTAGAGCCCTGGCTACTGTGAGAAAGCTGTGAATGATGGAGACCACATAAGGAATGA
ATTTTGCTAAAGATGAGATCATTGCATTTGAGAGTTATTCGTGCTCTTTCAGGGTGAAAA
AAAAAAAAATGACTTACCTGATTTGTCCAAAATAAAAATCATTAAACAAAATAAAAGAAG
GTGTGTGGGGGGAAGGTTCAACTTAATTAGGTAAAACTCTTAAAGAGGAGTTCCCATCAT
GGCTCAGTGGAAATGAATCTGACTAGCATCCATGAG

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               257-368, + strand, RNAz p=0.513923

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               257-368, + strand, RNAz p=0.513923

Aligned organism(s): 11 entry(ies)

More info

Aligned organism(s): 11 entry(ies)

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               1-395, gnl|bosTau2|chr15 (8237898-8237498)
               

               
               1-395, gnl|canFam2|chr5 (24086164-24085638)
               

               
               1-395, gnl|dasNov1|scaffold_109898 (4257-3758)
               

               
               1-395, gnl|hg17|chr11 (111418313-111418847)
               

               
               1-395, gnl|Hg17|chr11 (111418490-111418892)
               

               
               1-395, gnl|mm7|chr9 (50624862-50624362)
               

               
               1-395, gnl|Mm7|chr9 (50624688-50624193)
               

               
               1-395, gnl|oryCun1|scaffold_153144 (2096-2615)
               

               
               1-395, gnl|panTro1|chr9 (113429051-113429585)
               

               
               1-395, gnl|rheMac2|chr14 (110516104-110516639)
               

               
               1-395, gnl|rn3|chr8 (54019443-54018931)

Aligned organism(s): 11 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-395, gnl|bosTau2|chr15 (8237898-8237498)
               

               
               1-395, gnl|canFam2|chr5 (24086164-24085638)
               

               
               1-395, gnl|dasNov1|scaffold_109898 (4257-3758)
               

               
               1-395, gnl|hg17|chr11 (111418313-111418847)
               

               
               1-395, gnl|Hg17|chr11 (111418490-111418892)
               

               
               1-395, gnl|mm7|chr9 (50624862-50624362)
               

               
               1-395, gnl|Mm7|chr9 (50624688-50624193)
               

               
               1-395, gnl|oryCun1|scaffold_153144 (2096-2615)
               

               
               1-395, gnl|panTro1|chr9 (113429051-113429585)
               

               
               1-395, gnl|rheMac2|chr14 (110516104-110516639)
               

               
               1-395, gnl|rn3|chr8 (54019443-54018931)

	1-395, gnl\|bosTau2\|chr15 (8237898-8237498)
	1-395, gnl\|canFam2\|chr5 (24086164-24085638)
	1-395, gnl\|dasNov1\|scaffold_109898 (4257-3758)
	1-395, gnl\|hg17\|chr11 (111418313-111418847)
	1-395, gnl\|Hg17\|chr11 (111418490-111418892)
	1-395, gnl\|mm7\|chr9 (50624862-50624362)
	1-395, gnl\|Mm7\|chr9 (50624688-50624193)
	1-395, gnl\|oryCun1\|scaffold_153144 (2096-2615)
	1-395, gnl\|panTro1\|chr9 (113429051-113429585)
	1-395, gnl\|rheMac2\|chr14 (110516104-110516639)
	1-395, gnl\|rn3\|chr8 (54019443-54018931)