Non-Coding RNA Search

Ss1.1-Ovi2-UMC-peov1-009-a09.3

Sequence:


               
               GCGGCCGCTGGGGCTGGGGCCGCCGGCGAAGCAGGGCTCGGGCCCGGCCGGGCAGCTCCG
GAGCGGCGGGGGAGAGGGGCCGGGAGGCGGGGGCTGTGCCGCCCGCTCTCCTCTCCCTCG
GCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGTGCGCGGGGCTGGGACCCGATGCGGTT
GGAGCCGCGGAGCCTGGAGGAGCCCCGAGCTTTTCTGCTTTGGGACAGCCACGCATCTAA
TTCCTTAAAGTACTTTTATATGTAAAACTTGTAAAGGATCAGAACAATGCCTCCAAGACC
ATCATCAGGTGAACTGTGGGGCATCCACTTGATGCCCCCAAGAATCCTAGTGGAATGTTT
ACTACCAAATGGAATGATAGTGACTTTAGAATGCCTCCGTGAGGCTACATTAGTAACTAT
AAAGCATGAACTATTTAAAGAAGCAAGAAAATACCCTCTCCATCAACTTCTTCAAGATGA
ATCTTCTTACATTTTCGTAAGTGTTACCCAAGAAGCAGAAAGGGAAGAATTTTTTGATGA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCGGCCGCTGGGGCTGGGGCCGCCGGCGAAGCAGGGCTCGGGCCCGGCCGGGCAGCTCCG
GAGCGGCGGGGGAGAGGGGCCGGGAGGCGGGGGCTGTGCCGCCCGCTCTCCTCTCCCTCG
GCGCCGCCGCCGCCGCCGCCGCCGCCGCCGTCGTGCGCGGGGCTGGGACCCGATGCGGTT
GGAGCCGCGGAGCCTGGAGGAGCCCCGAGCTTTTCTGCTTTGGGACAGCCACGCATCTAA
TTCCTTAAAGTACTTTTATATGTAAAACTTGTAAAGGATCAGAACAATGCCTCCAAGACC
ATCATCAGGTGAACTGTGGGGCATCCACTTGATGCCCCCAAGAATCCTAGTGGAATGTTT
ACTACCAAATGGAATGATAGTGACTTTAGAATGCCTCCGTGAGGCTACATTAGTAACTAT
AAAGCATGAACTATTTAAAGAAGCAAGAAAATACCCTCTCCATCAACTTCTTCAAGATGA
ATCTTCTTACATTTTCGTAAGTGTTACCCAAGAAGCAGAAAGGGAAGAATTTTTTGATGA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               251-410, - strand, RNAz p=0.958554

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               251-410, - strand, RNAz p=0.958554

Aligned organism(s): 12 entry(ies)

More info

Aligned organism(s): 12 entry(ies)

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               1-188, gnl|bosTau2|chr1 (57108756-57108941)
               

               
               1-188, gnl|canFam2|chr34 (15608104-15608335)
               

               
               1-188, gnl|dasNov1|scaffold_19967 (9904-9691)
               

               
               1-188, gnl|hg17|chr3 (180348867-180349080)
               

               
               1-188, gnl|loxAfr1|scaffold_8175 (41607-41379)
               

               
               1-188, gnl|mm7|chr3 (32206057-32206247)
               

               
               1-188, gnl|oryCun1|scaffold_161473 (6666-6977)
               

               
               1-188, gnl|panTro1|chr2 (184104076-184104289)
               

               
               1-188, gnl|rheMac2|chr2 (107663715-107663502)
               


               
               212-540, gnl|bosTau2|chr1 (57161861-57162189)
               

               
               212-540, gnl|Hg17|chr3 (180399241-180399569)
               

               
               212-540, gnl|Mm7|chr3 (32244898-32245226)

Aligned organism(s): 12 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-188, gnl|bosTau2|chr1 (57108756-57108941)
               

               
               1-188, gnl|canFam2|chr34 (15608104-15608335)
               

               
               1-188, gnl|dasNov1|scaffold_19967 (9904-9691)
               

               
               1-188, gnl|hg17|chr3 (180348867-180349080)
               

               
               1-188, gnl|loxAfr1|scaffold_8175 (41607-41379)
               

               
               1-188, gnl|mm7|chr3 (32206057-32206247)
               

               
               1-188, gnl|oryCun1|scaffold_161473 (6666-6977)
               

               
               1-188, gnl|panTro1|chr2 (184104076-184104289)
               

               
               1-188, gnl|rheMac2|chr2 (107663715-107663502)
               


               
               212-540, gnl|bosTau2|chr1 (57161861-57162189)
               

               
               212-540, gnl|Hg17|chr3 (180399241-180399569)
               

               
               212-540, gnl|Mm7|chr3 (32244898-32245226)

	1-188, gnl\|bosTau2\|chr1 (57108756-57108941)
	1-188, gnl\|canFam2\|chr34 (15608104-15608335)
	1-188, gnl\|dasNov1\|scaffold_19967 (9904-9691)
	1-188, gnl\|hg17\|chr3 (180348867-180349080)
	1-188, gnl\|loxAfr1\|scaffold_8175 (41607-41379)
	1-188, gnl\|mm7\|chr3 (32206057-32206247)
	1-188, gnl\|oryCun1\|scaffold_161473 (6666-6977)
	1-188, gnl\|panTro1\|chr2 (184104076-184104289)
	1-188, gnl\|rheMac2\|chr2 (107663715-107663502)

	212-540, gnl\|bosTau2\|chr1 (57161861-57162189)
	212-540, gnl\|Hg17\|chr3 (180399241-180399569)
	212-540, gnl\|Mm7\|chr3 (32244898-32245226)