Non-Coding RNA Search

Ss1.1-Pey1-01D05.3

Sequence:


               
               GCCCTGCCCCCGTCCCGGGAGACAACAAATCCCGCGTAGCTGACACGGATTCTGGGCGGC
GGCGCTGCCGTCGGGCGGGATCTGCGATCAGGGCGCTGGGACGCGGGCGGCGGCGGGAAT
GAGGGGCGAGGGGAGGGTGCCGGGGCGCACGGGCGCGGGGCGGCGGCGGCGGGAAGGACG
GGTCCACCGCCCCGCGGCGCGGCGGCCTCAAGCCACCTCCTGCTCGCCTTGGTAGTGGCG
GCAGCAGCCGTAGAGCGCCGAGAGCAGGTAGAGGCCGAGGCAGAGGCCGCCGCAGACCGC
GGCCGCCAGGAAGGCGTGGTAGGCGCAGGGCATCTGGTAATCCTTGAGGTTGCAGTAACT
GTGGCTCTGCGTCTGGCTGATCATGATGCCCGTCGCGGCTCCGTAGAGCGCGGCCGCCAG
CAGGTCGTGCGCCACGTTGACCACCAGCCAGCGCGAGCCGAGCACAGGCACCAGCTCGTG
CTTGCCCAGCAGCGTGAGGAAGTAGAGGCCCAGGGTCAGCAGCCAGAAGAGCACCGACAC
GAAGAGCGCGAAATGCACCGGGCCCTGGTACCTGCTCGTGGCGATGGTGATCCAGAAGGC
GGCGCCGGCCAGCAGCTGCAGCAGCCGCAGTACGCCCAGCGGGCCGCGCAGGAAGGCCCG
CTGCAGGCTCACCGCGCCGCGGGCCGTGCGCGCCTGGGGCGGCGGCTGGCGCGGGGGCGG
TGGAAGCATGGCCCCCGGGCGCGGTGGCGGCGGCGGCGGCGCCCCGAGCAGCGGAATGGC
GACGTCTGGCTCGCGGGGGCAGCCCGGCCGACGTGCCCCTGCGCCCGCCCGGCCTCCTCG
CTCCCCTCCGAGTCCTCCTCGGACGCGTGGGTCGAC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCCTGCCCCCGTCCCGGGAGACAACAAATCCCGCGTAGCTGACACGGATTCTGGGCGGC
GGCGCTGCCGTCGGGCGGGATCTGCGATCAGGGCGCTGGGACGCGGGCGGCGGCGGGAAT
GAGGGGCGAGGGGAGGGTGCCGGGGCGCACGGGCGCGGGGCGGCGGCGGCGGGAAGGACG
GGTCCACCGCCCCGCGGCGCGGCGGCCTCAAGCCACCTCCTGCTCGCCTTGGTAGTGGCG
GCAGCAGCCGTAGAGCGCCGAGAGCAGGTAGAGGCCGAGGCAGAGGCCGCCGCAGACCGC
GGCCGCCAGGAAGGCGTGGTAGGCGCAGGGCATCTGGTAATCCTTGAGGTTGCAGTAACT
GTGGCTCTGCGTCTGGCTGATCATGATGCCCGTCGCGGCTCCGTAGAGCGCGGCCGCCAG
CAGGTCGTGCGCCACGTTGACCACCAGCCAGCGCGAGCCGAGCACAGGCACCAGCTCGTG
CTTGCCCAGCAGCGTGAGGAAGTAGAGGCCCAGGGTCAGCAGCCAGAAGAGCACCGACAC
GAAGAGCGCGAAATGCACCGGGCCCTGGTACCTGCTCGTGGCGATGGTGATCCAGAAGGC
GGCGCCGGCCAGCAGCTGCAGCAGCCGCAGTACGCCCAGCGGGCCGCGCAGGAAGGCCCG
CTGCAGGCTCACCGCGCCGCGGGCCGTGCGCGCCTGGGGCGGCGGCTGGCGCGGGGGCGG
TGGAAGCATGGCCCCCGGGCGCGGTGGCGGCGGCGGCGGCGCCCCGAGCAGCGGAATGGC
GACGTCTGGCTCGCGGGGGCAGCCCGGCCGACGTGCCCCTGCGCCCGCCCGGCCTCCTCG
CTCCCCTCCGAGTCCTCCTCGGACGCGTGGGTCGAC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q7TQJ1_MOUSE

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q7TQJ1_MOUSE

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               205-324, - strand, RNAz p=0.703233

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               205-324, - strand, RNAz p=0.703233

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               267-357, + strand, RNAmicro p=0.998731
               

               
               165-288, - strand, RNAmicro p=0.992263

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               267-357, + strand, RNAmicro p=0.998731
               

               
               165-288, - strand, RNAmicro p=0.992263

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               32-860, gnl|bosTau2|chr26 (10425503-10426338)
               

               
               32-860, gnl|Hg17|chr10 (99464384-99463489)
               

               
               32-860, gnl|Mm7|chr19 (42042153-42041303)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               32-860, gnl|bosTau2|chr26 (10425503-10426338)
               

               
               32-860, gnl|Hg17|chr10 (99464384-99463489)
               

               
               32-860, gnl|Mm7|chr19 (42042153-42041303)

	267-357, + strand, RNAmicro p=0.998731
	165-288, - strand, RNAmicro p=0.992263

	32-860, gnl\|bosTau2\|chr26 (10425503-10426338)
	32-860, gnl\|Hg17\|chr10 (99464384-99463489)
	32-860, gnl\|Mm7\|chr19 (42042153-42041303)