Non-Coding RNA Search

Ss1.1-Pey1-03E06.5

Sequence:


               
               GTCCGGAGAACTGCGGACAGCGGTCTAGATGCACAGCCCAAGAAGGTCCGAAAGGTGCCA
CCAGGTCTCCCATCCTCGGTGTACCCACCCAGCTCAGGTGATGACTACAGCAGGAACACA
GCCGCCTACCCGTCCACCAAGACCCCCAGCAGCGCCTACCCCACCCCCTTCTACATGGCA
GATGGCAGCTTGCACCCCCCAGCCGAACTCTGGAGCCCCCCAGGCCAGGCAGGTTTTGGG
CCCATGCTGGGCGGTGCCTCGTCCCCCCTGCCCCTCCCACCAGGTGGCAGCAGCTCCGTG
GGCAGCGGCAGCGGTGGGTTTGGTGGCCTACACCAGCACGAGCGCATGGGCTACCAGCTG
CACAGCACGGAGGTGAATGGCGGGCTCCCAGCCGTGTCCACCTTCTCCTCGGTCCCCGCA
GCCGCCTACGGAAGCGTCTCCAGCCACACGCCCCCTGTCAGCGGGGCCGACGGCCTCCTG
GGCTCCCGTGGGACCACAGCCAGCAGCTCAGGGGACGCCCTTGGGAAGGCACTAGCCTCG
ATCTACTCCCCAGATCACTCAAGCAATAACTTCTCATCCAGCCCCTCAACCCCCGTGGGC
TCCCCACAGGGCCTGGCAGGGACGTCACAGTGGCCCCGAGCCGGAGCTCCTGGTGCCTTA
TCGCCCAGCTACGATGGGGGCCTCCATGGCCTGCAGAGCAAGATGGAGGACCACCTGGAC
GAGGCCATCCATGTCCTCCGCAGCCACGCCGTGGGCACAGCAGGGGATGTGCACGGGCTG
CTGCCTGGCCACGGGGCACTGGCCTCAGGCTTTGCCGGCCCTGTCATGCCACTGAGCGGG
CGGCACGCTGGCCTGGTGGGAGCCGGCCACTCAGAAGATGGCCTTTCAGGCAGCAGTGGC
CTCATGCACAACCACGTGGCCCTCCCCGACCTTTCTCGACCACCTGACTCCTACGGTGAT
CTCGGGCGTGGC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTCCGGAGAACTGCGGACAGCGGTCTAGATGCACAGCCCAAGAAGGTCCGAAAGGTGCCA
CCAGGTCTCCCATCCTCGGTGTACCCACCCAGCTCAGGTGATGACTACAGCAGGAACACA
GCCGCCTACCCGTCCACCAAGACCCCCAGCAGCGCCTACCCCACCCCCTTCTACATGGCA
GATGGCAGCTTGCACCCCCCAGCCGAACTCTGGAGCCCCCCAGGCCAGGCAGGTTTTGGG
CCCATGCTGGGCGGTGCCTCGTCCCCCCTGCCCCTCCCACCAGGTGGCAGCAGCTCCGTG
GGCAGCGGCAGCGGTGGGTTTGGTGGCCTACACCAGCACGAGCGCATGGGCTACCAGCTG
CACAGCACGGAGGTGAATGGCGGGCTCCCAGCCGTGTCCACCTTCTCCTCGGTCCCCGCA
GCCGCCTACGGAAGCGTCTCCAGCCACACGCCCCCTGTCAGCGGGGCCGACGGCCTCCTG
GGCTCCCGTGGGACCACAGCCAGCAGCTCAGGGGACGCCCTTGGGAAGGCACTAGCCTCG
ATCTACTCCCCAGATCACTCAAGCAATAACTTCTCATCCAGCCCCTCAACCCCCGTGGGC
TCCCCACAGGGCCTGGCAGGGACGTCACAGTGGCCCCGAGCCGGAGCTCCTGGTGCCTTA
TCGCCCAGCTACGATGGGGGCCTCCATGGCCTGCAGAGCAAGATGGAGGACCACCTGGAC
GAGGCCATCCATGTCCTCCGCAGCCACGCCGTGGGCACAGCAGGGGATGTGCACGGGCTG
CTGCCTGGCCACGGGGCACTGGCCTCAGGCTTTGCCGGCCCTGTCATGCCACTGAGCGGG
CGGCACGCTGGCCTGGTGGGAGCCGGCCACTCAGAAGATGGCCTTTCAGGCAGCAGTGGC
CTCATGCACAACCACGTGGCCCTCCCCGACCTTTCTCGACCACCTGACTCCTACGGTGAT
CTCGGGCGTGGC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|181906|gb|AAA52331.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|181906|gb|AAA52331.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               238-349, - strand, RNAz p=0.826926

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               238-349, - strand, RNAz p=0.826926

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               161-349, gnl|bosTau2|chr7 (28411136-28411318)
               

               
               161-349, gnl|Hg17|chr19 (1573239-1573052)
               

               
               161-349, gnl|Mm7|chr10 (80206215-80206039)
               


               
               693-866, gnl|bosTau2|chr7 (28413239-28413412)
               

               
               693-866, gnl|Hg17|chr19 (1570474-1570303)
               

               
               693-866, gnl|Mm7|chr10 (80204251-80204081)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               161-349, gnl|bosTau2|chr7 (28411136-28411318)
               

               
               161-349, gnl|Hg17|chr19 (1573239-1573052)
               

               
               161-349, gnl|Mm7|chr10 (80206215-80206039)
               


               
               693-866, gnl|bosTau2|chr7 (28413239-28413412)
               

               
               693-866, gnl|Hg17|chr19 (1570474-1570303)
               

               
               693-866, gnl|Mm7|chr10 (80204251-80204081)

	161-349, gnl\|bosTau2\|chr7 (28411136-28411318)
	161-349, gnl\|Hg17\|chr19 (1573239-1573052)
	161-349, gnl\|Mm7\|chr10 (80206215-80206039)

	693-866, gnl\|bosTau2\|chr7 (28413239-28413412)
	693-866, gnl\|Hg17\|chr19 (1570474-1570303)
	693-866, gnl\|Mm7\|chr10 (80204251-80204081)