Ss1.1-Pey1-47A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CGGGAGGAGCTGAGCGAGTTCGTGGAGAGCTGTTGGCGGACGCTGGAGGAGGTGACGACG TCTCTGGGCTGGACCCTGGACCGGCTGGTCCCCGGAGAGGAGGAGGCGGCGGCAGAGGAT GAAGTCGTGATATGTCCTTATGATTCCAACCATCACATGCCTAAGTCGTCTTTGGCAAAG CACATGGAATCTTGTAGATTAAGAAAACTGGGCTATACCAAAGAAGAAGAGGATAAAATG TATAATTCTGATTTTTTCTATGAGAATGCAAAGGTACCTTCAGTTACTTTGAATAAGGAC TCACAGTACCAGATAATTAAACGAGCTAGAGCTGCAGTTGGAAAAGACGGTGATTGTTAT AATCAGATAATGGGGGTGAGTATAAAGAGGAATTAGGAAGCTGAATGTACTCCTTATTTA AAGATATGCAGTATCCTTTTTGCAAATGATATCCTTTTAAAAGTGTCACTCAAGGGTCCA AACTTTCTTTATCACTGTCACTATGTTACAGTCTTGATTTGGAATTTTAGTTGAATTTCA AAGAATTGAAGTTTCACTCTTCACTACACAGAAATTTAAGGAAAGCAAGGAAAAACTCCA AGATGTCTTAAGGAGAAAATTATACTTTGTTTAAAAAGAACAGGCAAAGGTTTATGTGAA GCTTGTTGATAATACATTAGTGTTTTCTCTTCTTTGTATTTTTCTCCCAGCGTGTATACA TAGCCTGTGTTCAAATCAATTAGGTTTATCAAAGCTAACTCATTTTTATGTTGTAAAATT TAAATGTTTTAACATCTGACTGCGTAAAAGGACTTTCTTAGTGTCCTCCCGAATTAGAGT GGGGTGGATCGAAACGGGGGGAGCCCCCTCTTCCCCCCTGATCCAGGAGCCTCCTGCTAG CAAAGTGGCCGTGTCCTGTCAGCCTGGGACTCAGACTCACCAAAGCTCCTGAATTTGTAG ACAAATACAAAGTCATCTCTCTTTTTGTGTCTCATGCTGAAGTTCCTCGTACGCTCTTAC TGGAATTTTTGTTTTGCCTCTGCCTAGGATGTCGGTGAGGTTAGACTTACCAAATATAAG CATCTGGAAAGTGCTACTGATTTTCTCTTGTTCTGTGAGCCTGAGTTACTACTTTAGGGT AGCCTAGCAAACATTAAAAGGATTCCTTTAGTAGCTCATGTTCTTTGTCTGCCCTGGAGA ATAATGAAGTCTAGAAAGAATCGTTTTGAATTGCTTTATTTACAGTTACAGTAATTTTTT TACTTGAGAAAATTTAAATCTCAAAACAAATTTTCTTCAGTGTTTAATACATCATATCAA GGTATTGTATTTTCTTTTTTTCATTCATGAGCAGATTTTAGAAAGGGCCATGCCTGTGGG GGGTGGGGTACTGTCGCTAACTTTTCTCATTTAATTTGATGAAGCCAATGTGTTTCCTCT TAGGAAAATTAAAACAGCTTTAGTCTCAGTCTGTCTTTCTCTGCTCTGAGGAAGTTTGAG GTATCTGCTACTTAATTGTTTTCTGGTCCCTAGCTCCAAGCTATTGCACAAGGGGGATGT ATTTTGAATATGGAACATCTAGTCTGATGTCTCTCATAAAAAATAGTTTTTGCGCATTTT TCATATTTCTGTATTTTATTTTTAAAGGGCCTGTAGTGTGTAATACCTATTCAAGGCATT TTCTTCGTGCCTTTACGGGGAAAAGCGTATAGATGAAGAAGCTTACTCTCTACTTGGCAG TGCAGGTGGCCTTATGAGCCGATTGTCCGTGGCTGTTCCTGCCTGCCTTCTGGGGATCGG TCTTAACGCTGCTGGAGGGAATAGCAGACGTCCCTGCCACGTCCTTTTTGCGGGTGGGGC ACTCANGCTAGAGTTCGGTGCTGACCACCGTCACTCCCACTGATGGTT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CGGGAGGAGCTGAGCGAGTTCGTGGAGAGCTGTTGGCGGACGCTGGAGGAGGTGACGACG TCTCTGGGCTGGACCCTGGACCGGCTGGTCCCCGGAGAGGAGGAGGCGGCGGCAGAGGAT GAAGTCGTGATATGTCCTTATGATTCCAACCATCACATGCCTAAGTCGTCTTTGGCAAAG CACATGGAATCTTGTAGATTAAGAAAACTGGGCTATACCAAAGAAGAAGAGGATAAAATG TATAATTCTGATTTTTTCTATGAGAATGCAAAGGTACCTTCAGTTACTTTGAATAAGGAC TCACAGTACCAGATAATTAAACGAGCTAGAGCTGCAGTTGGAAAAGACGGTGATTGTTAT AATCAGATAATGGGGGTGAGTATAAAGAGGAATTAGGAAGCTGAATGTACTCCTTATTTA AAGATATGCAGTATCCTTTTTGCAAATGATATCCTTTTAAAAGTGTCACTCAAGGGTCCA AACTTTCTTTATCACTGTCACTATGTTACAGTCTTGATTTGGAATTTTAGTTGAATTTCA AAGAATTGAAGTTTCACTCTTCACTACACAGAAATTTAAGGAAAGCAAGGAAAAACTCCA AGATGTCTTAAGGAGAAAATTATACTTTGTTTAAAAAGAACAGGCAAAGGTTTATGTGAA GCTTGTTGATAATACATTAGTGTTTTCTCTTCTTTGTATTTTTCTCCCAGCGTGTATACA TAGCCTGTGTTCAAATCAATTAGGTTTATCAAAGCTAACTCATTTTTATGTTGTAAAATT TAAATGTTTTAACATCTGACTGCGTAAAAGGACTTTCTTAGTGTCCTCCCGAATTAGAGT GGGGTGGATCGAAACGGGGGGAGCCCCCTCTTCCCCCCTGATCCAGGAGCCTCCTGCTAG CAAAGTGGCCGTGTCCTGTCAGCCTGGGACTCAGACTCACCAAAGCTCCTGAATTTGTAG ACAAATACAAAGTCATCTCTCTTTTTGTGTCTCATGCTGAAGTTCCTCGTACGCTCTTAC TGGAATTTTTGTTTTGCCTCTGCCTAGGATGTCGGTGAGGTTAGACTTACCAAATATAAG CATCTGGAAAGTGCTACTGATTTTCTCTTGTTCTGTGAGCCTGAGTTACTACTTTAGGGT AGCCTAGCAAACATTAAAAGGATTCCTTTAGTAGCTCATGTTCTTTGTCTGCCCTGGAGA ATAATGAAGTCTAGAAAGAATCGTTTTGAATTGCTTTATTTACAGTTACAGTAATTTTTT TACTTGAGAAAATTTAAATCTCAAAACAAATTTTCTTCAGTGTTTAATACATCATATCAA GGTATTGTATTTTCTTTTTTTCATTCATGAGCAGATTTTAGAAAGGGCCATGCCTGTGGG GGGTGGGGTACTGTCGCTAACTTTTCTCATTTAATTTGATGAAGCCAATGTGTTTCCTCT TAGGAAAATTAAAACAGCTTTAGTCTCAGTCTGTCTTTCTCTGCTCTGAGGAAGTTTGAG GTATCTGCTACTTAATTGTTTTCTGGTCCCTAGCTCCAAGCTATTGCACAAGGGGGATGT ATTTTGAATATGGAACATCTAGTCTGATGTCTCTCATAAAAAATAGTTTTTGCGCATTTT TCATATTTCTGTATTTTATTTTTAAAGGGCCTGTAGTGTGTAATACCTATTCAAGGCATT TTCTTCGTGCCTTTACGGGGAAAAGCGTATAGATGAAGAAGCTTACTCTCTACTTGGCAG TGCAGGTGGCCTTATGAGCCGATTGTCCGTGGCTGTTCCTGCCTGCCTTCTGGGGATCGG TCTTAACGCTGCTGGAGGGAATAGCAGACGTCCCTGCCACGTCCTTTTTGCGGGTGGGGC ACTCANGCTAGAGTTCGGTGCTGACCACCGTCACTCCCACTGATGGTT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 394-489, - strand, RNAz p=0.625799 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 394-489, - strand, RNAz p=0.625799 |
| Aligned organism(s): 44 entry(ies) | More info |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
| 1-118, gnl|bosTau2|chr23 (39686887-39687004) | |
| 1-118, gnl|canFam2|chr35 (10536086-10536199) | |
| 1-118, gnl|danRer3|chr16 (42870598-42870703) | |
| 1-118, gnl|dasNov1|scaffold_6036 (2918-2805) | |
| 1-118, gnl|echTel1|scaffold_91815 (156-43) | |
| 1-118, gnl|hg17|chr6 (7535499-7535612) | |
| 1-118, gnl|Hg17|chr6 (7535532-7535646) | |
| 1-118, gnl|loxAfr1|scaffold_61448 (11938-12051) | |
| 1-118, gnl|mm7|chr13 (37623877-37623990) | |
| 1-118, gnl|Mm7|chr13 (37623910-37624024) | |
| 1-118, gnl|monDom2|scaffold_3 (92275762-92275875) | |
| 1-118, gnl|panTro1|chr5 (7907862-7907975) | |
| 1-118, gnl|rheMac2|chr4 (7497879-7497992) | |
| 1-118, gnl|rn3|chr17 (32843556-32843443) | |
| 363-512, gnl|bosTau2|chr23 (39694361-39694511) | |
| 363-512, gnl|canFam2|chr35 (10543514-10543633) | |
| 363-512, gnl|danRer3|chr16 (42872908-42873014) | |
| 363-512, gnl|dasNov1|scaffold_9514 (4328-4446) | |
| 363-512, gnl|echTel1|scaffold_5563 (2044-2162) | |
| 363-512, gnl|hg17|chr6 (7544892-7545005) | |
| 363-512, gnl|Hg17|chr6 (7544901-7545044) | |
| 363-512, gnl|loxAfr1|scaffold_40505 (18708-18589) | |
| 363-512, gnl|mm7|chr13 (37633487-37633606) | |
| 363-512, gnl|Mm7|chr13 (37633496-37633633) | |
| 363-512, gnl|monDom2|scaffold_3 (92285955-92286070) | |
| 363-512, gnl|panTro1|chr5 (7917448-7917567) | |
| 363-512, gnl|rheMac2|chr4 (7507421-7507540) | |
| 363-512, gnl|rn3|chr17 (32834041-32833922) | |
| 363-512, gnl|xenTro1|scaffold_64 (1989730-1989846) | |
| 680-1046, gnl|bosTau2|chr23 (39694512-39694878) | |
| 1077-1735, gnl|bosTau2|chr23 (39694877-39695519) | |
| 1077-1735, gnl|canFam2|chr35 (10544156-10544666) | |
| 1077-1735, gnl|dasNov1|scaffold_9514 (4972-5491) | |
| 1077-1735, gnl|echTel1|scaffold_5563 (2502-3051) | |
| 1077-1735, gnl|hg17|chr6 (7545500-7546011) | |
| 1077-1735, gnl|Hg17|chr6 (7545583-7546231) | |
| 1077-1735, gnl|loxAfr1|scaffold_40505 (18082-17548) | |
| 1077-1735, gnl|mm7|chr13 (37634030-37634473) | |
| 1077-1735, gnl|Mm7|chr13 (37634072-37634843) | |
| 1077-1735, gnl|monDom2|scaffold_3 (92286618-92287172) | |
| 1077-1735, gnl|oryCun1|scaffold_117890 (9290-8781) | |
| 1077-1735, gnl|panTro1|chr5 (7918063-7918574) | |
| 1077-1735, gnl|rheMac2|chr4 (7508031-7508545) | |
| 1077-1735, gnl|rn3|chr17 (32832675-32832241) |
| Aligned organism(s): 44 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-118, gnl|bosTau2|chr23 (39686887-39687004) | |
| 1-118, gnl|canFam2|chr35 (10536086-10536199) | |
| 1-118, gnl|danRer3|chr16 (42870598-42870703) | |
| 1-118, gnl|dasNov1|scaffold_6036 (2918-2805) | |
| 1-118, gnl|echTel1|scaffold_91815 (156-43) | |
| 1-118, gnl|hg17|chr6 (7535499-7535612) | |
| 1-118, gnl|Hg17|chr6 (7535532-7535646) | |
| 1-118, gnl|loxAfr1|scaffold_61448 (11938-12051) | |
| 1-118, gnl|mm7|chr13 (37623877-37623990) | |
| 1-118, gnl|Mm7|chr13 (37623910-37624024) | |
| 1-118, gnl|monDom2|scaffold_3 (92275762-92275875) | |
| 1-118, gnl|panTro1|chr5 (7907862-7907975) | |
| 1-118, gnl|rheMac2|chr4 (7497879-7497992) | |
| 1-118, gnl|rn3|chr17 (32843556-32843443) | |
| 363-512, gnl|bosTau2|chr23 (39694361-39694511) | |
| 363-512, gnl|canFam2|chr35 (10543514-10543633) | |
| 363-512, gnl|danRer3|chr16 (42872908-42873014) | |
| 363-512, gnl|dasNov1|scaffold_9514 (4328-4446) | |
| 363-512, gnl|echTel1|scaffold_5563 (2044-2162) | |
| 363-512, gnl|hg17|chr6 (7544892-7545005) | |
| 363-512, gnl|Hg17|chr6 (7544901-7545044) | |
| 363-512, gnl|loxAfr1|scaffold_40505 (18708-18589) | |
| 363-512, gnl|mm7|chr13 (37633487-37633606) | |
| 363-512, gnl|Mm7|chr13 (37633496-37633633) | |
| 363-512, gnl|monDom2|scaffold_3 (92285955-92286070) | |
| 363-512, gnl|panTro1|chr5 (7917448-7917567) | |
| 363-512, gnl|rheMac2|chr4 (7507421-7507540) | |
| 363-512, gnl|rn3|chr17 (32834041-32833922) | |
| 363-512, gnl|xenTro1|scaffold_64 (1989730-1989846) | |
| 680-1046, gnl|bosTau2|chr23 (39694512-39694878) | |
| 1077-1735, gnl|bosTau2|chr23 (39694877-39695519) | |
| 1077-1735, gnl|canFam2|chr35 (10544156-10544666) | |
| 1077-1735, gnl|dasNov1|scaffold_9514 (4972-5491) | |
| 1077-1735, gnl|echTel1|scaffold_5563 (2502-3051) | |
| 1077-1735, gnl|hg17|chr6 (7545500-7546011) | |
| 1077-1735, gnl|Hg17|chr6 (7545583-7546231) | |
| 1077-1735, gnl|loxAfr1|scaffold_40505 (18082-17548) | |
| 1077-1735, gnl|mm7|chr13 (37634030-37634473) | |
| 1077-1735, gnl|Mm7|chr13 (37634072-37634843) | |
| 1077-1735, gnl|monDom2|scaffold_3 (92286618-92287172) | |
| 1077-1735, gnl|oryCun1|scaffold_117890 (9290-8781) | |
| 1077-1735, gnl|panTro1|chr5 (7918063-7918574) | |
| 1077-1735, gnl|rheMac2|chr4 (7508031-7508545) | |
| 1077-1735, gnl|rn3|chr17 (32832675-32832241) |