Non-Coding RNA Search

Ss1.1-Pey1-54E07.5

Sequence:


               
               GAGCGGCTGAAGCAGGAGCATATGGAAAATCAGCGGACGGCAGGGGAGACTGAAGACTTT
AACTGAAATGTGTACTCCTGGCTCTCAGCTTTTAACGGTCCTGATCAGTCTTGATCTAGG
TCTAGGACTGGTCACTTTTTCTGGGCCTCAAGGTGTCTCAATGCTTGGAGTAAAAATGCT
CCACTGCTTAAAAGAACGTTAACTGACCTCACTAGGCATTGTGATGTTGAAGGGCAAATA
TCACAAAATGTAATTTAATGCCTGCCCTTTCTAGAAGTATTTATCAAGGGAAAAGTAGTT
GCATTTTTGCCTCCTCTTGAGTCAGGAAAGTTTCTGTGTATGGACTTTGGTGTAAGTCAT
TCAGTGAGAATTGTGGCTCCTTCTTGAATTGTGAGAAAGCAGAGGCATCTGCTTTTCTTG
ACTGCACTGTGGTTGGTGATGTGTCCACCTCCCGCTCTGAGAGACCACGATGTCCTTGAG
ATGGGGACAAATCCATCTACTCTTTGAGACCCCAGTGCCTCACACATCCTGAGCCTTCAG
TCAGTGTTTGTTGAATGGACAAATCAGTCAATGCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAGCGGCTGAAGCAGGAGCATATGGAAAATCAGCGGACGGCAGGGGAGACTGAAGACTTT
AACTGAAATGTGTACTCCTGGCTCTCAGCTTTTAACGGTCCTGATCAGTCTTGATCTAGG
TCTAGGACTGGTCACTTTTTCTGGGCCTCAAGGTGTCTCAATGCTTGGAGTAAAAATGCT
CCACTGCTTAAAAGAACGTTAACTGACCTCACTAGGCATTGTGATGTTGAAGGGCAAATA
TCACAAAATGTAATTTAATGCCTGCCCTTTCTAGAAGTATTTATCAAGGGAAAAGTAGTT
GCATTTTTGCCTCCTCTTGAGTCAGGAAAGTTTCTGTGTATGGACTTTGGTGTAAGTCAT
TCAGTGAGAATTGTGGCTCCTTCTTGAATTGTGAGAAAGCAGAGGCATCTGCTTTTCTTG
ACTGCACTGTGGTTGGTGATGTGTCCACCTCCCGCTCTGAGAGACCACGATGTCCTTGAG
ATGGGGACAAATCCATCTACTCTTTGAGACCCCAGTGCCTCACACATCCTGAGCCTTCAG
TCAGTGTTTGTTGAATGGACAAATCAGTCAATGCTT

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

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               199-311, - strand, RNAz p=0.634075
               

               
               389-485, - strand, RNAz p=0.999729

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               199-311, - strand, RNAz p=0.634075
               

               
               389-485, - strand, RNAz p=0.999729

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               3-568, gnl|bosTau2|chr22 (12146230-12146799)
               

               
               3-568, gnl|Hg17|chr3 (10166604-10167183)
               

               
               3-568, gnl|Mm7|chr6 (113790448-113790956)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-568, gnl|bosTau2|chr22 (12146230-12146799)
               

               
               3-568, gnl|Hg17|chr3 (10166604-10167183)
               

               
               3-568, gnl|Mm7|chr6 (113790448-113790956)

	199-311, - strand, RNAz p=0.634075
	389-485, - strand, RNAz p=0.999729

	3-568, gnl\|bosTau2\|chr22 (12146230-12146799)
	3-568, gnl\|Hg17\|chr3 (10166604-10167183)
	3-568, gnl\|Mm7\|chr6 (113790448-113790956)