Ss1.1-Pey1-56B09.5
|
AGCTGCTGCTGCTGCTGCCCACCNTACAGAGCATCACNTGGCAGATGATCGAGCAGATCC
AGTTCATCAAGCTCTTTGGCATGGCCAAGATTGACAACCTGCTGCAGGAGATGCTGCTGG
GAGGGTCCTCCAGTGATGCACCTCATGCCCACCACCCCCTGCACCCTCACNTGATGCAGG
AACACATGGGCACCAATGTCATTGTTGCCAACACAATGCCTGCTCACCTCAGCAACGGAC
AGATGTGTGAGTGGCCCCGGCCCAGAGGGCAGGCAGCCACCCCTGAGACTCCACAGCCCT
CGCCGCCAGGTGGCTCAGGGTCTGAGCCCTACAAGCTCCTGCCAGGAGCCATCGCCACCA
TCGTCAAGCCCCCCTCTGCAATCCCACAGCCGACCATCACCAAGCAGGAAGTCATCTAGC
AAGTCACCAGGGGGCCGGGGGCTCTGATGACCCCCCAGCCCCCTCAGACAGCCCCTGAGG
GTCACTTGGTCACAGTGAAGAAAGCTGTGACAACAGGGCCAGTCCCAGAGTGGTAGTGGA
AAGGGTGAGGCCCTAGAACTCAGGCCATGGGCCACCCGCCAATGCCACCCTTCACCACCT
GCTTGGGATGATGGGGCTGTGACTTGGGGAGCCCCCTGCTGGAAAGTGCTCTGCTGCCTT
GGACAACTTCTCTCCTGCCAAAGCCACTGCCTTCCCCATTCTTCGCCCCAATTTCTTCAC
CCCCAAAGGACTGCTGCCTGGAGACAACAGGGGACCTTGATTAAACATGGCTCCCTCCCA
CTCAGACTGGGACTTTGCCCCACATTCTGCCCTTGTGTCAGACACAGAGCACGTCGAGGC
TGGGTCAGACGGCAGCACCTCACCCATCCCTATGCTGCTGCCCCAGCCGCCAAGGCTCCT
CTCCTCTTGCCACCATCACCCTCCCCAGCCCTGTTCATTTCTCCAAAGCCTCCTCTCCAG
AGGTTGAGAAAGACTTGCAGACAACTCCCCAGCCATCCCGGGAGCACTGTGAAAGCACTG
ACGGGGGCTAGGCAGAGTGCAGGAGGTTGTTGAGAAAGAAGATGCAGTTTCTCCTCTAAC
CCATCTTCGGGGACTTGGATGGATTCTCTGAGTCAGAGAGATGATCCCTACAGGCTGCCA
ACAGGGAGAGAA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCTGCTGCTGCTGCTGCCCACCNTACAGAGCATCACNTGGCAGATGATCGAGCAGATCC
AGTTCATCAAGCTCTTTGGCATGGCCAAGATTGACAACCTGCTGCAGGAGATGCTGCTGG
GAGGGTCCTCCAGTGATGCACCTCATGCCCACCACCCCCTGCACCCTCACNTGATGCAGG
AACACATGGGCACCAATGTCATTGTTGCCAACACAATGCCTGCTCACCTCAGCAACGGAC
AGATGTGTGAGTGGCCCCGGCCCAGAGGGCAGGCAGCCACCCCTGAGACTCCACAGCCCT
CGCCGCCAGGTGGCTCAGGGTCTGAGCCCTACAAGCTCCTGCCAGGAGCCATCGCCACCA
TCGTCAAGCCCCCCTCTGCAATCCCACAGCCGACCATCACCAAGCAGGAAGTCATCTAGC
AAGTCACCAGGGGGCCGGGGGCTCTGATGACCCCCCAGCCCCCTCAGACAGCCCCTGAGG
GTCACTTGGTCACAGTGAAGAAAGCTGTGACAACAGGGCCAGTCCCAGAGTGGTAGTGGA
AAGGGTGAGGCCCTAGAACTCAGGCCATGGGCCACCCGCCAATGCCACCCTTCACCACCT
GCTTGGGATGATGGGGCTGTGACTTGGGGAGCCCCCTGCTGGAAAGTGCTCTGCTGCCTT
GGACAACTTCTCTCCTGCCAAAGCCACTGCCTTCCCCATTCTTCGCCCCAATTTCTTCAC
CCCCAAAGGACTGCTGCCTGGAGACAACAGGGGACCTTGATTAAACATGGCTCCCTCCCA
CTCAGACTGGGACTTTGCCCCACATTCTGCCCTTGTGTCAGACACAGAGCACGTCGAGGC
TGGGTCAGACGGCAGCACCTCACCCATCCCTATGCTGCTGCCCCAGCCGCCAAGGCTCCT
CTCCTCTTGCCACCATCACCCTCCCCAGCCCTGTTCATTTCTCCAAAGCCTCCTCTCCAG
AGGTTGAGAAAGACTTGCAGACAACTCCCCAGCCATCCCGGGAGCACTGTGAAAGCACTG
ACGGGGGCTAGGCAGAGTGCAGGAGGTTGTTGAGAAAGAAGATGCAGTTTCTCCTCTAAC
CCATCTTCGGGGACTTGGATGGATTCTCTGAGTCAGAGAGATGATCCCTACAGGCTGCCA
ACAGGGAGAGAA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
139-205, - strand, RNAmicro p=0.987628 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
139-205, - strand, RNAmicro p=0.987628 |
|
114-276, gnl|bosTau2|chr13 (53640576-53640414) |
|
114-276, gnl|canFam2|chr24 (34876121-34876278) |
|
114-276, gnl|danRer3|chr23 (38743562-38743720) |
|
114-276, gnl|echTel1|scaffold_309812 (39973-40130) |
|
114-276, gnl|fr1|chrUn (209396123-209396254) |
|
114-276, gnl|galGal2|chr20 (5151906-5151768) |
|
114-276, gnl|hg17|chr20 (42490374-42490531) |
|
114-276, gnl|Hg17|chr20 (42490379-42490541) |
|
114-276, gnl|mm7|chr2 (163309762-163309919) |
|
114-276, gnl|Mm7|chr2 (163309763-163309929) |
|
114-276, gnl|monDom2|scaffold_1 (157348843-157348686) |
|
114-276, gnl|oryCun1|scaffold_133611 (11246-11089) |
|
114-276, gnl|panTro1|chr21 (44932584-44932741) |
|
114-276, gnl|rheMac2|chr10 (20022067-20021910) |
|
114-276, gnl|rn3|chr3 (154387540-154387697) |
|
114-276, gnl|tetNig1|chr9 (10116888-10116751) |
|
114-276, gnl|xenTro1|scaffold_184 (574571-574718) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
114-276, gnl|bosTau2|chr13 (53640576-53640414) |
|
114-276, gnl|canFam2|chr24 (34876121-34876278) |
|
114-276, gnl|danRer3|chr23 (38743562-38743720) |
|
114-276, gnl|echTel1|scaffold_309812 (39973-40130) |
|
114-276, gnl|fr1|chrUn (209396123-209396254) |
|
114-276, gnl|galGal2|chr20 (5151906-5151768) |
|
114-276, gnl|hg17|chr20 (42490374-42490531) |
|
114-276, gnl|Hg17|chr20 (42490379-42490541) |
|
114-276, gnl|mm7|chr2 (163309762-163309919) |
|
114-276, gnl|Mm7|chr2 (163309763-163309929) |
|
114-276, gnl|monDom2|scaffold_1 (157348843-157348686) |
|
114-276, gnl|oryCun1|scaffold_133611 (11246-11089) |
|
114-276, gnl|panTro1|chr21 (44932584-44932741) |
|
114-276, gnl|rheMac2|chr10 (20022067-20021910) |
|
114-276, gnl|rn3|chr3 (154387540-154387697) |
|
114-276, gnl|tetNig1|chr9 (10116888-10116751) |
|
114-276, gnl|xenTro1|scaffold_184 (574571-574718) |
