Non-Coding RNA Search

Ss1.1-Pig1-100I19.5

Sequence:


               
               CTCAGACTGAGGAGAAGCCTTTCCTTCTGCTGCTACTGCTGCTGCCGCTACTTTTGAGGG
TCCACTCCTTTCATGGTTTTTCCTGCCAAACCAGAGGCACCTTCGCTGCTGTCGCTGTTC
TCTTTGGTGTCATTCAGCGGCTGGCCAGAGGATGAGACTCCCCAAACTCCTCACTTTCTT
GCTTTGGCACCTGGCTTGGCTGGACCTGGAATTCATCTGCACTGTCTTGGGTGCCCCTGA
CTTGGGCCAGAGACCCCAGGGGGCCAGGCCAGGATTGGCCAAAGCAGAAGCCAAGGAGAG
GCCCCCTCTGGCCCAGAACATCTTCAGGCCAGGGGGTCACAGCTATGGTGGGGGGGCCAC
CAATGCCAGGGCAAAGGGGGGCACCGGGCAGACAGGAGGCCTGACACAGCCCAAGAAGGA
TGAACCCAAAAAGCTGCCCCCCAGATCCGGTGGCCTTGAACCCAAGCCAGGACACCCTCC
CCAGACAAGGCAGGCTGCAACGCGGACTGTGACCCCCAAAGGACAGCTTCCTGGGGGTAA
GGCACCCCAAAAGGCAGGATCTGTCCCTAGTCCCTT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTCAGACTGAGGAGAAGCCTTTCCTTCTGCTGCTACTGCTGCTGCCGCTACTTTTGAGGG
TCCACTCCTTTCATGGTTTTTCCTGCCAAACCAGAGGCACCTTCGCTGCTGTCGCTGTTC
TCTTTGGTGTCATTCAGCGGCTGGCCAGAGGATGAGACTCCCCAAACTCCTCACTTTCTT
GCTTTGGCACCTGGCTTGGCTGGACCTGGAATTCATCTGCACTGTCTTGGGTGCCCCTGA
CTTGGGCCAGAGACCCCAGGGGGCCAGGCCAGGATTGGCCAAAGCAGAAGCCAAGGAGAG
GCCCCCTCTGGCCCAGAACATCTTCAGGCCAGGGGGTCACAGCTATGGTGGGGGGGCCAC
CAATGCCAGGGCAAAGGGGGGCACCGGGCAGACAGGAGGCCTGACACAGCCCAAGAAGGA
TGAACCCAAAAAGCTGCCCCCCAGATCCGGTGGCCTTGAACCCAAGCCAGGACACCCTCC
CCAGACAAGGCAGGCTGCAACGCGGACTGTGACCCCCAAAGGACAGCTTCCTGGGGGTAA
GGCACCCCAAAAGGCAGGATCTGTCCCTAGTCCCTT

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               80-393, + strand, RNAz p=0.99685
               

               
               185-415, - strand, RNAz p=0.997256

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               80-393, + strand, RNAz p=0.99685
               

               
               185-415, - strand, RNAz p=0.997256

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               171-297, + strand, RNAmicro p=0.999974

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               171-297, + strand, RNAmicro p=0.999974

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               80-349, 602732285F1 NIH_MGC_43 Homo sapiens cDNA clone IMAGE (gb|BG753200.1|), 
blast E-value=0, identity=97.04% 
               

               
               80-393, AGENCOURT_7046315 NIH_MGC_101 Homo sapiens cDNA clone IMAGE 
(gb|BQ073584.1|), blast E-value=0, identity=92.81% 
               

               
               80-393, AGENCOURT_10325352 NIH_MGC_40 Homo sapiens cDNA clone IMAGE 
(gb|BU541856.1|), blast E-value=0, identity=92.81% 
               

               
               80-393, AGENCOURT_14372061 NIH_MGC_179 Homo sapiens cDNA clone (gb|CD513413.1|), 
blast E-value=0, identity=93.12% 
               

               
               80-393, UI-HF-FQ0-awq-m-15-0-UI.r1 NIH_MGC_215 Homo sapiens cDNA clone 
(gb|CF132743.1|), blast E-value=0, identity=92.81% 
               

               
               80-393, 17000470667886 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN394178.1|), blast E-value=0, identity=92.81%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               80-349, 602732285F1 NIH_MGC_43 Homo sapiens cDNA clone IMAGE (gb|BG753200.1|), 
blast E-value=0, identity=97.04% 
               

               
               80-393, AGENCOURT_7046315 NIH_MGC_101 Homo sapiens cDNA clone IMAGE 
(gb|BQ073584.1|), blast E-value=0, identity=92.81% 
               

               
               80-393, AGENCOURT_10325352 NIH_MGC_40 Homo sapiens cDNA clone IMAGE 
(gb|BU541856.1|), blast E-value=0, identity=92.81% 
               

               
               80-393, AGENCOURT_14372061 NIH_MGC_179 Homo sapiens cDNA clone (gb|CD513413.1|), 
blast E-value=0, identity=93.12% 
               

               
               80-393, UI-HF-FQ0-awq-m-15-0-UI.r1 NIH_MGC_215 Homo sapiens cDNA clone 
(gb|CF132743.1|), blast E-value=0, identity=92.81% 
               

               
               80-393, 17000470667886 GRN_EB Homo sapiens cDNA 5', mRNA sequence 
(gb|CN394178.1|), blast E-value=0, identity=92.81%

Aligned organism(s): 16 entry(ies)

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Aligned organism(s): 16 entry(ies)

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               1-576, gnl|bosTau2|chr13 (45669525-45668949)
               

               
               1-576, gnl|canFam2|chr24 (27370787-27371274)
               

               
               1-576, gnl|danRer3|chrNA (174329459-174329024)
               

               
               1-576, gnl|dasNov1|scaffold_31554 (4214-4701)
               

               
               1-576, gnl|echTel1|scaffold_248610 (1093-1579)
               

               
               1-576, gnl|galGal2|chr20 (1134949-1134459)
               

               
               1-576, gnl|hg17|chr20 (33488684-33489177)
               

               
               1-576, gnl|Hg17|chr20 (33489274-33488692)
               

               
               1-576, gnl|loxAfr1|scaffold_66062 (5358-4872)
               

               
               1-576, gnl|mm7|chr2 (155685493-155685968)
               

               
               1-576, gnl|Mm7|chr2 (155686062-155685501)
               

               
               1-576, gnl|monDom2|scaffold_6 (11546225-11545750)
               

               
               1-576, gnl|oryCun1|scaffold_140799 (17853-18344)
               

               
               1-576, gnl|panTro1|chr21 (35508673-35509166)
               

               
               1-576, gnl|rheMac2|chr10 (29107136-29106649)
               

               
               1-576, gnl|xenTro1|scaffold_71 (770858-771332)

Aligned organism(s): 16 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-576, gnl|bosTau2|chr13 (45669525-45668949)
               

               
               1-576, gnl|canFam2|chr24 (27370787-27371274)
               

               
               1-576, gnl|danRer3|chrNA (174329459-174329024)
               

               
               1-576, gnl|dasNov1|scaffold_31554 (4214-4701)
               

               
               1-576, gnl|echTel1|scaffold_248610 (1093-1579)
               

               
               1-576, gnl|galGal2|chr20 (1134949-1134459)
               

               
               1-576, gnl|hg17|chr20 (33488684-33489177)
               

               
               1-576, gnl|Hg17|chr20 (33489274-33488692)
               

               
               1-576, gnl|loxAfr1|scaffold_66062 (5358-4872)
               

               
               1-576, gnl|mm7|chr2 (155685493-155685968)
               

               
               1-576, gnl|Mm7|chr2 (155686062-155685501)
               

               
               1-576, gnl|monDom2|scaffold_6 (11546225-11545750)
               

               
               1-576, gnl|oryCun1|scaffold_140799 (17853-18344)
               

               
               1-576, gnl|panTro1|chr21 (35508673-35509166)
               

               
               1-576, gnl|rheMac2|chr10 (29107136-29106649)
               

               
               1-576, gnl|xenTro1|scaffold_71 (770858-771332)

	80-393, + strand, RNAz p=0.99685
	185-415, - strand, RNAz p=0.997256

	80-349, 602732285F1 NIH_MGC_43 Homo sapiens cDNA clone IMAGE (gb\|BG753200.1\|), blast E-value=0, identity=97.04%
	80-393, AGENCOURT_7046315 NIH_MGC_101 Homo sapiens cDNA clone IMAGE (gb\|BQ073584.1\|), blast E-value=0, identity=92.81%
	80-393, AGENCOURT_10325352 NIH_MGC_40 Homo sapiens cDNA clone IMAGE (gb\|BU541856.1\|), blast E-value=0, identity=92.81%
	80-393, AGENCOURT_14372061 NIH_MGC_179 Homo sapiens cDNA clone (gb\|CD513413.1\|), blast E-value=0, identity=93.12%
	80-393, UI-HF-FQ0-awq-m-15-0-UI.r1 NIH_MGC_215 Homo sapiens cDNA clone (gb\|CF132743.1\|), blast E-value=0, identity=92.81%
	80-393, 17000470667886 GRN_EB Homo sapiens cDNA 5', mRNA sequence (gb\|CN394178.1\|), blast E-value=0, identity=92.81%

	1-576, gnl\|bosTau2\|chr13 (45669525-45668949)
	1-576, gnl\|canFam2\|chr24 (27370787-27371274)
	1-576, gnl\|danRer3\|chrNA (174329459-174329024)
	1-576, gnl\|dasNov1\|scaffold_31554 (4214-4701)
	1-576, gnl\|echTel1\|scaffold_248610 (1093-1579)
	1-576, gnl\|galGal2\|chr20 (1134949-1134459)
	1-576, gnl\|hg17\|chr20 (33488684-33489177)
	1-576, gnl\|Hg17\|chr20 (33489274-33488692)
	1-576, gnl\|loxAfr1\|scaffold_66062 (5358-4872)
	1-576, gnl\|mm7\|chr2 (155685493-155685968)
	1-576, gnl\|Mm7\|chr2 (155686062-155685501)
	1-576, gnl\|monDom2\|scaffold_6 (11546225-11545750)
	1-576, gnl\|oryCun1\|scaffold_140799 (17853-18344)
	1-576, gnl\|panTro1\|chr21 (35508673-35509166)
	1-576, gnl\|rheMac2\|chr10 (29107136-29106649)
	1-576, gnl\|xenTro1\|scaffold_71 (770858-771332)