Ss1.1-Pig1-101A22.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACATGCCATATGGCAGGGTGAAGGCTACCATGTACCTGACCTACCTGCGAGCCGTGGGCA CCCCCCTCTGCCTCTATACACTGTTCCTCTTCCTCTGCCAGCAAGTGGCCTCCTTCTGCC GTGGCTATTGGCTGAGCCTGTGGGCAGACGACCCTACCGTGGACGGACGGCAGACACAGG CAGCCCTGCGGGGCTGGGTCTTCGGGCTCCTGGGCTGCCTCCAAGCAATTGGGCTCTTTG CCTCCATGGCCACGGTGCTCCTAGGTGGGATCCGGGCATCCACCCTGCTCTTCCGGAAGC TCCTGTGGGACGTGGCCCGGTCTCCTATCGGCTTCTTTGAGCAGACGCCCATCGGGAACC TGCTGAACCGCTTCTCGAAGGAGACAGACATAGTGGATGTGGACATCCCAGACAGACTGC GGTCTTTGCTGATGTATGCCTTCGGCCTCCTGGAAGTCGCCCTGGTGGTGACAGTGGCCA CCCCACTGGCTGTTGTGGCCGTCCTGCCTCTGCTGCTCCTCTATGCTGGGTTTCAGCGCC TGTATGTGGCCAGCTCGTGCCAGCTCAGACGCCTGGAGTCAGCCAGGTACTCATTCGTGT GTTCCCACGTGGCTGAGACATTCCAGGGCGGGACAGTCATCAGGGCCTTCCGAGCCCAGG GCCCCTTTGTGGCTCAGAGCAACGCACGCGTGGATGAAAGCCAGAGAGTCAGTTTCCCGC GGCTGGTGGCTGACAGGTGGCTTGCTGCCAACCTGGAGCTCCTGGGGAACGGACTGGTGT TCGCGGCTGCCCTGTGCGCTGTGCTGAGCAAGGCGCACCTCAGCCCTGGCCTCGTGGGCT TCTCTGTCTCCGCTGCCCTGCAGGTGACGCAGACGCTGCAGTGGGCTGTTCGCAGCTGGA CGGACCTGGAGAGCAGCATCGTGTCGGTGGAGCGGCTGAGGGACTACG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACATGCCATATGGCAGGGTGAAGGCTACCATGTACCTGACCTACCTGCGAGCCGTGGGCA CCCCCCTCTGCCTCTATACACTGTTCCTCTTCCTCTGCCAGCAAGTGGCCTCCTTCTGCC GTGGCTATTGGCTGAGCCTGTGGGCAGACGACCCTACCGTGGACGGACGGCAGACACAGG CAGCCCTGCGGGGCTGGGTCTTCGGGCTCCTGGGCTGCCTCCAAGCAATTGGGCTCTTTG CCTCCATGGCCACGGTGCTCCTAGGTGGGATCCGGGCATCCACCCTGCTCTTCCGGAAGC TCCTGTGGGACGTGGCCCGGTCTCCTATCGGCTTCTTTGAGCAGACGCCCATCGGGAACC TGCTGAACCGCTTCTCGAAGGAGACAGACATAGTGGATGTGGACATCCCAGACAGACTGC GGTCTTTGCTGATGTATGCCTTCGGCCTCCTGGAAGTCGCCCTGGTGGTGACAGTGGCCA CCCCACTGGCTGTTGTGGCCGTCCTGCCTCTGCTGCTCCTCTATGCTGGGTTTCAGCGCC TGTATGTGGCCAGCTCGTGCCAGCTCAGACGCCTGGAGTCAGCCAGGTACTCATTCGTGT GTTCCCACGTGGCTGAGACATTCCAGGGCGGGACAGTCATCAGGGCCTTCCGAGCCCAGG GCCCCTTTGTGGCTCAGAGCAACGCACGCGTGGATGAAAGCCAGAGAGTCAGTTTCCCGC GGCTGGTGGCTGACAGGTGGCTTGCTGCCAACCTGGAGCTCCTGGGGAACGGACTGGTGT TCGCGGCTGCCCTGTGCGCTGTGCTGAGCAAGGCGCACCTCAGCCCTGGCCTCGTGGGCT TCTCTGTCTCCGCTGCCCTGCAGGTGACGCAGACGCTGCAGTGGGCTGTTCGCAGCTGGA CGGACCTGGAGAGCAGCATCGTGTCGGTGGAGCGGCTGAGGGACTACG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 221-336, - strand, RNAz p=0.947448 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 221-336, - strand, RNAz p=0.947448 |
| Aligned organism(s): 37 entry(ies) | More info |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
| 221-536, gnl|bosTau2|chr25 (16434014-16434329) | |
| 221-536, gnl|canFam2|chr6 (30866874-30866599) | |
| 221-536, gnl|danRer3|chr3 (32438315-32438579) | |
| 221-536, gnl|dasNov1|scaffold_161129 (3594-3870) | |
| 221-536, gnl|echTel1|scaffold_184580 (4106-4381) | |
| 221-536, gnl|fr1|chrUn (106283907-106284169) | |
| 221-536, gnl|galGal2|chr14 (9748768-9749030) | |
| 221-536, gnl|hg17|chr16 (16166966-16167241) | |
| 221-536, gnl|Hg17|chr16 (16167296-16166981) | |
| 221-536, gnl|loxAfr1|scaffold_14243 (6765-7037) | |
| 221-536, gnl|mm7|chr7 (42162550-42162825) | |
| 221-536, gnl|Mm7|chr7 (42162880-42162565) | |
| 221-536, gnl|monDom2|scaffold_19 (36156788-36157066) | |
| 221-536, gnl|oryCun1|scaffold_213401 (170936-170672) | |
| 221-536, gnl|panTro1|chr18 (16542354-16542629) | |
| 221-536, gnl|rheMac2|chr20 (15874929-15875204) | |
| 221-536, gnl|rn3|chr1 (96536621-96536890) | |
| 221-536, gnl|tetNig1|chr18 (4589471-4589710) | |
| 734-874, gnl|bosTau2|chr25 (16438789-16438929) | |
| 734-874, gnl|canFam2|chr6 (30871075-30870906) | |
| 734-874, gnl|danRer3|chr3 (32437818-32437949) | |
| 734-874, gnl|dasNov1|scaffold_7489 (11452-11596) | |
| 734-874, gnl|echTel1|scaffold_184580 (1369-1513) | |
| 734-874, gnl|fr1|chrUn (106283259-106283404) | |
| 734-874, gnl|galGal2|chr14 (9747904-9748072) | |
| 734-874, gnl|hg17|chr16 (16162793-16162961) | |
| 734-874, gnl|Hg17|chr16 (16162925-16162785) | |
| 734-874, gnl|loxAfr1|scaffold_26625 (19319-19451) | |
| 734-874, gnl|mm7|chr7 (42159536-42159705) | |
| 734-874, gnl|Mm7|chr7 (42159668-42159530) | |
| 734-874, gnl|monDom2|scaffold_19 (36153830-36153972) | |
| 734-874, gnl|oryCun1|scaffold_213401 (173139-172975) | |
| 734-874, gnl|panTro1|chr18 (16538082-16538250) | |
| 734-874, gnl|rheMac2|chr20 (15870756-15870924) | |
| 734-874, gnl|rn3|chr1 (96533699-96533868) | |
| 734-874, gnl|tetNig1|chr18 (4588747-4588903) | |
| 734-874, gnl|xenTro1|scaffold_214 (213056-212894) |
| Aligned organism(s): 37 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 221-536, gnl|bosTau2|chr25 (16434014-16434329) | |
| 221-536, gnl|canFam2|chr6 (30866874-30866599) | |
| 221-536, gnl|danRer3|chr3 (32438315-32438579) | |
| 221-536, gnl|dasNov1|scaffold_161129 (3594-3870) | |
| 221-536, gnl|echTel1|scaffold_184580 (4106-4381) | |
| 221-536, gnl|fr1|chrUn (106283907-106284169) | |
| 221-536, gnl|galGal2|chr14 (9748768-9749030) | |
| 221-536, gnl|hg17|chr16 (16166966-16167241) | |
| 221-536, gnl|Hg17|chr16 (16167296-16166981) | |
| 221-536, gnl|loxAfr1|scaffold_14243 (6765-7037) | |
| 221-536, gnl|mm7|chr7 (42162550-42162825) | |
| 221-536, gnl|Mm7|chr7 (42162880-42162565) | |
| 221-536, gnl|monDom2|scaffold_19 (36156788-36157066) | |
| 221-536, gnl|oryCun1|scaffold_213401 (170936-170672) | |
| 221-536, gnl|panTro1|chr18 (16542354-16542629) | |
| 221-536, gnl|rheMac2|chr20 (15874929-15875204) | |
| 221-536, gnl|rn3|chr1 (96536621-96536890) | |
| 221-536, gnl|tetNig1|chr18 (4589471-4589710) | |
| 734-874, gnl|bosTau2|chr25 (16438789-16438929) | |
| 734-874, gnl|canFam2|chr6 (30871075-30870906) | |
| 734-874, gnl|danRer3|chr3 (32437818-32437949) | |
| 734-874, gnl|dasNov1|scaffold_7489 (11452-11596) | |
| 734-874, gnl|echTel1|scaffold_184580 (1369-1513) | |
| 734-874, gnl|fr1|chrUn (106283259-106283404) | |
| 734-874, gnl|galGal2|chr14 (9747904-9748072) | |
| 734-874, gnl|hg17|chr16 (16162793-16162961) | |
| 734-874, gnl|Hg17|chr16 (16162925-16162785) | |
| 734-874, gnl|loxAfr1|scaffold_26625 (19319-19451) | |
| 734-874, gnl|mm7|chr7 (42159536-42159705) | |
| 734-874, gnl|Mm7|chr7 (42159668-42159530) | |
| 734-874, gnl|monDom2|scaffold_19 (36153830-36153972) | |
| 734-874, gnl|oryCun1|scaffold_213401 (173139-172975) | |
| 734-874, gnl|panTro1|chr18 (16538082-16538250) | |
| 734-874, gnl|rheMac2|chr20 (15870756-15870924) | |
| 734-874, gnl|rn3|chr1 (96533699-96533868) | |
| 734-874, gnl|tetNig1|chr18 (4588747-4588903) | |
| 734-874, gnl|xenTro1|scaffold_214 (213056-212894) |