Ss1.1-Pig1-102O01.5
|
TAAGATCAACTCCTAACCTGAGCCTGGATGACGTAAAGGTAAAAGTGGAAAAGAAGGAAC
AGATGGATCCTTGTAACACAAATCCAACCCCAATGACCAAACCTCCTCCTGAGGAAATTA
AACTGGAGTCACAGAGCCAGTTTACAGCTGACCTTGACCAGTTTGATCAGTTACTACCCA
CACTGGAGAAGGCAGCACAGTTACCAGGCTTATGTGAGACAGAGAGGATGGATGGTGCGG
TCACCAGCGTAACCATCAAATCGGAGATCCTGCCAGCTACACTTCAGTCCACCACTGCCA
GACCTACTTCCAGGCTGAATAGATTACCTGAGCTAGAATTGGAAGCAATTGATAACCAGT
TTGGACAACCGGGAACAGGTGATCAGATTCCATGGGCAAATAATACAGTGACAGCTGTAA
ATCAGAATAAACCAGAAGACCAGTGTATTAGTTCACAATTAGATGAGCTTCTCTGTCCAC
CAACAACAGTTGAAGGAAGAAATGATGAGAAGGCTCTTCTTGAACAGCTGGTATCCTTCC
TCAGCGGCAAAGATGAAACTGAGTTAGCGGAACTAGACAGAGCTCTGGGAATCGACAAAC
TTGTTCAGGGAGGAGGATTGGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACAC
CGCCATTGATGATGGAAGAAAGACCCAACCTTTATTCACAGCCTTATTCTTCTCCATCAC
CTACTGCCAATCTCTCTGGCCCCTTCCAAGGCATGGTCAGGCAAAAACCTTCATTGGGGA
CTATGCCTGTTCAAGTAACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGC
CCAGGCAGACTCTAAACAGACCTCCAGCTGCACCCAACCAACTAAGACTTCAGCTTCAAC
AACGATTACAGGGACAACAGCAGT
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
TAAGATCAACTCCTAACCTGAGCCTGGATGACGTAAAGGTAAAAGTGGAAAAGAAGGAAC
AGATGGATCCTTGTAACACAAATCCAACCCCAATGACCAAACCTCCTCCTGAGGAAATTA
AACTGGAGTCACAGAGCCAGTTTACAGCTGACCTTGACCAGTTTGATCAGTTACTACCCA
CACTGGAGAAGGCAGCACAGTTACCAGGCTTATGTGAGACAGAGAGGATGGATGGTGCGG
TCACCAGCGTAACCATCAAATCGGAGATCCTGCCAGCTACACTTCAGTCCACCACTGCCA
GACCTACTTCCAGGCTGAATAGATTACCTGAGCTAGAATTGGAAGCAATTGATAACCAGT
TTGGACAACCGGGAACAGGTGATCAGATTCCATGGGCAAATAATACAGTGACAGCTGTAA
ATCAGAATAAACCAGAAGACCAGTGTATTAGTTCACAATTAGATGAGCTTCTCTGTCCAC
CAACAACAGTTGAAGGAAGAAATGATGAGAAGGCTCTTCTTGAACAGCTGGTATCCTTCC
TCAGCGGCAAAGATGAAACTGAGTTAGCGGAACTAGACAGAGCTCTGGGAATCGACAAAC
TTGTTCAGGGAGGAGGATTGGATGTATTATCAGAGAGATTTCCACCACAACAAGCAACAC
CGCCATTGATGATGGAAGAAAGACCCAACCTTTATTCACAGCCTTATTCTTCTCCATCAC
CTACTGCCAATCTCTCTGGCCCCTTCCAAGGCATGGTCAGGCAAAAACCTTCATTGGGGA
CTATGCCTGTTCAAGTAACACCTCCCCGAGGTGCTTTTTCACCTGGCATGGGCATGCAGC
CCAGGCAGACTCTAAACAGACCTCCAGCTGCACCCAACCAACTAAGACTTCAGCTTCAAC
AACGATTACAGGGACAACAGCAGT
|
|
gi|61814837|ref|XP_603699.1| |
Protein identifier
|
gi|61814837|ref|XP_603699.1| |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
139-322, gnl|bosTau2|chr11 (53236791-53236974) |
|
139-322, gnl|canFam2|chr17 (22053546-22053771) |
|
139-322, gnl|dasNov1|scaffold_117043 (795-1021) |
|
139-322, gnl|echTel1|scaffold_281632 (48402-48178) |
|
139-322, gnl|galGal2|chr3 (103458879-103458680) |
|
139-322, gnl|hg17|chr2 (24845427-24845653) |
|
139-322, gnl|Hg17|chr2 (24845449-24845632) |
|
139-322, gnl|mm7|chr12 (4217294-4217067) |
|
139-322, gnl|Mm7|chr12 (4217270-4217087) |
|
139-322, gnl|monDom2|scaffold_1 (152524677-152524441) |
|
139-322, gnl|oryCun1|scaffold_199039 (45817-46042) |
|
139-322, gnl|panTro1|chr12 (25723342-25723568) |
|
139-322, gnl|rheMac2|chr13 (24627759-24627985) |
|
139-322, gnl|rn3|chr6 (27277855-27277629) |
|
139-322, gnl|xenTro1|scaffold_508 (820687-820892) |
| |
|
606-923, gnl|bosTau2|chr11 (53251091-53251408) |
|
606-923, gnl|Hg17|chr2 (24864018-24864335) |
|
606-923, gnl|Mm7|chr12 (4201365-4201048) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
139-322, gnl|bosTau2|chr11 (53236791-53236974) |
|
139-322, gnl|canFam2|chr17 (22053546-22053771) |
|
139-322, gnl|dasNov1|scaffold_117043 (795-1021) |
|
139-322, gnl|echTel1|scaffold_281632 (48402-48178) |
|
139-322, gnl|galGal2|chr3 (103458879-103458680) |
|
139-322, gnl|hg17|chr2 (24845427-24845653) |
|
139-322, gnl|Hg17|chr2 (24845449-24845632) |
|
139-322, gnl|mm7|chr12 (4217294-4217067) |
|
139-322, gnl|Mm7|chr12 (4217270-4217087) |
|
139-322, gnl|monDom2|scaffold_1 (152524677-152524441) |
|
139-322, gnl|oryCun1|scaffold_199039 (45817-46042) |
|
139-322, gnl|panTro1|chr12 (25723342-25723568) |
|
139-322, gnl|rheMac2|chr13 (24627759-24627985) |
|
139-322, gnl|rn3|chr6 (27277855-27277629) |
|
139-322, gnl|xenTro1|scaffold_508 (820687-820892) |
| |
|
606-923, gnl|bosTau2|chr11 (53251091-53251408) |
|
606-923, gnl|Hg17|chr2 (24864018-24864335) |
|
606-923, gnl|Mm7|chr12 (4201365-4201048) |
