Ss1.1-Pig1-106O11.5
|
AGCGAGCCAATGAGATGTGACTGGAGGGGCCGCTGTGCCTCTTTTAAAGGAAGCGGATGA
GCTCGCGCCCCTCGCCCCTTGCCACCTAGGACTGAGCTGGTGGCCCCAGGAGCCCTTTCT
TCTAACGCCCACATCCCTTTGTCTCTGGGAACCAGCAAGGCAGGCGTCCCACATTCCACT
GCACCGCCAAATAAAGAGGCGAGCTGCGCTCTCTGCGGGAGGAGATTTCCCTTTTGGAGC
GTGACAAAGAATATGAACTTAAGGAGATAGAACAGGAGCTGCACTTGGCCCGGGCTGAGA
TCCAGAATCTGCGGCAAGCAGCGGAAGATTCTGCGACCGATCACGAGAGTGACATCGCCT
CCCTGCAGGAGGATATCTGCCGGATGCGGAATGAACTCGAGGACATGGAGCGCATCCGGG
GAGAGTATGAGATGGAGATCACCACGCTCCGCGCAGAAATGGAAATGAAGACCTCTGACC
CTTCCAACAGCTTAAGTCTCTCCGACTTCTCTGAGATGCAAGAAGAGTTGCAGCAGCTGC
GGGACCGCTACCGCTTCCTGAATGAGGAGTACCAGGCCCTGCAGGAGAGCAACAGCAGCC
TCACAGGGCAGCTTGCAGAGCTGG
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
AGCGAGCCAATGAGATGTGACTGGAGGGGCCGCTGTGCCTCTTTTAAAGGAAGCGGATGA
GCTCGCGCCCCTCGCCCCTTGCCACCTAGGACTGAGCTGGTGGCCCCAGGAGCCCTTTCT
TCTAACGCCCACATCCCTTTGTCTCTGGGAACCAGCAAGGCAGGCGTCCCACATTCCACT
GCACCGCCAAATAAAGAGGCGAGCTGCGCTCTCTGCGGGAGGAGATTTCCCTTTTGGAGC
GTGACAAAGAATATGAACTTAAGGAGATAGAACAGGAGCTGCACTTGGCCCGGGCTGAGA
TCCAGAATCTGCGGCAAGCAGCGGAAGATTCTGCGACCGATCACGAGAGTGACATCGCCT
CCCTGCAGGAGGATATCTGCCGGATGCGGAATGAACTCGAGGACATGGAGCGCATCCGGG
GAGAGTATGAGATGGAGATCACCACGCTCCGCGCAGAAATGGAAATGAAGACCTCTGACC
CTTCCAACAGCTTAAGTCTCTCCGACTTCTCTGAGATGCAAGAAGAGTTGCAGCAGCTGC
GGGACCGCTACCGCTTCCTGAATGAGGAGTACCAGGCCCTGCAGGAGAGCAACAGCAGCC
TCACAGGGCAGCTTGCAGAGCTGG
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
197-522, gnl|bosTau2|chr4 (50534164-50533839) |
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197-522, gnl|canFam2|chr14 (10801826-10801538) |
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197-522, gnl|danRer3|chrUn (92137203-92136918) |
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197-522, gnl|echTel1|scaffold_232930 (20154-19875) |
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197-522, gnl|fr1|chrUn (177101341-177101064) |
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197-522, gnl|hg17|chr7 (128035189-128035477) |
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197-522, gnl|Hg17|chr7 (128035189-128035514) |
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197-522, gnl|loxAfr1|scaffold_115581 (4301-4013) |
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197-522, gnl|mm7|chr6 (29338015-29338303) |
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197-522, gnl|Mm7|chr6 (29338015-29338337) |
|
197-522, gnl|monDom2|scaffold_22 (15789509-15789224) |
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197-522, gnl|oryCun1|scaffold_174955 (12564-12276) |
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197-522, gnl|panTro1|chr6 (130425908-130426196) |
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197-522, gnl|rheMac2|chr3 (166130873-166131161) |
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197-522, gnl|rn3|chr4 (56543748-56544036) |
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197-522, gnl|tetNig1|chr13 (9969150-9969427) |
|
197-522, gnl|xenTro1|scaffold_20 (3159607-3159894) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
197-522, gnl|bosTau2|chr4 (50534164-50533839) |
|
197-522, gnl|canFam2|chr14 (10801826-10801538) |
|
197-522, gnl|danRer3|chrUn (92137203-92136918) |
|
197-522, gnl|echTel1|scaffold_232930 (20154-19875) |
|
197-522, gnl|fr1|chrUn (177101341-177101064) |
|
197-522, gnl|hg17|chr7 (128035189-128035477) |
|
197-522, gnl|Hg17|chr7 (128035189-128035514) |
|
197-522, gnl|loxAfr1|scaffold_115581 (4301-4013) |
|
197-522, gnl|mm7|chr6 (29338015-29338303) |
|
197-522, gnl|Mm7|chr6 (29338015-29338337) |
|
197-522, gnl|monDom2|scaffold_22 (15789509-15789224) |
|
197-522, gnl|oryCun1|scaffold_174955 (12564-12276) |
|
197-522, gnl|panTro1|chr6 (130425908-130426196) |
|
197-522, gnl|rheMac2|chr3 (166130873-166131161) |
|
197-522, gnl|rn3|chr4 (56543748-56544036) |
|
197-522, gnl|tetNig1|chr13 (9969150-9969427) |
|
197-522, gnl|xenTro1|scaffold_20 (3159607-3159894) |
