Ss1.1-Pig1-107A11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| CTTTTGCAGTGCCGGGTGGTAAGTACTCAGACATGGCTTCTGCAGACTCCCGGCGGATGG GGAATGGCGGCAGTATGGGGGGCGCTTTCCATCCCTACCTGGACTCCTTGCGGCAGGAGC TACAGCAGAGGGACCCGACGCTGCTGTCAGTCGTGGTGGCGCTCGTCGCGGTGCTGCTGA CGCTAGTGTTCTGGAAGTTCATCCGGAGCAGAAGGAGCAGTCAAAGGGCGGTTCTTCTTG TTGGCCTTTGTGACTCCGGGAAAACATTGCTCTTTGTCAGATTGTTAACAGGCCTTTACA GGGACACTCAGACTTCCATCACTGACAGCTCTGCTGTGTATAGAGTCAACAATAACAGGG GTGCTAGCCTGACCTTGATTGACCTCCCTGGCCATGAGAGCTTGAGACTTCAGTTCCTAG AGCGGTTTAAGGCTTCAGCCAGGGCTATCGTGTTTGTAGTGGATAGTGCAGCCTTCCAGA GAGAGGTGAAAGATGTGGCAGAGTTTCTGTATCAAGTCCTCCTTGACAGTATAGGTCTGA AGAACACACCATCATTCTTAATTGCTTGCAATAAGCAAGACATTACAATGGCAAAGTCAG CAAAGTTAATTCAGCAGCAGCTTGAAAAAGAAATCAATACTTTGCGAGTCACCCGTTCTG CTGCCCCCAGCACACTGGACAGTTCTAGCACTACCCCTGTTCTGCTGGGAAGGAAAGGCA AAGAATTTGAGTTCTCACAGTTGCCCCTCAAAGTGGAGTTCCTGGAGTGCAGCGCTAAAG GTGGAAGAGGGGACACTGGCTCTGCTGACATCCAGGACCTGGAGAAGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| CTTTTGCAGTGCCGGGTGGTAAGTACTCAGACATGGCTTCTGCAGACTCCCGGCGGATGG GGAATGGCGGCAGTATGGGGGGCGCTTTCCATCCCTACCTGGACTCCTTGCGGCAGGAGC TACAGCAGAGGGACCCGACGCTGCTGTCAGTCGTGGTGGCGCTCGTCGCGGTGCTGCTGA CGCTAGTGTTCTGGAAGTTCATCCGGAGCAGAAGGAGCAGTCAAAGGGCGGTTCTTCTTG TTGGCCTTTGTGACTCCGGGAAAACATTGCTCTTTGTCAGATTGTTAACAGGCCTTTACA GGGACACTCAGACTTCCATCACTGACAGCTCTGCTGTGTATAGAGTCAACAATAACAGGG GTGCTAGCCTGACCTTGATTGACCTCCCTGGCCATGAGAGCTTGAGACTTCAGTTCCTAG AGCGGTTTAAGGCTTCAGCCAGGGCTATCGTGTTTGTAGTGGATAGTGCAGCCTTCCAGA GAGAGGTGAAAGATGTGGCAGAGTTTCTGTATCAAGTCCTCCTTGACAGTATAGGTCTGA AGAACACACCATCATTCTTAATTGCTTGCAATAAGCAAGACATTACAATGGCAAAGTCAG CAAAGTTAATTCAGCAGCAGCTTGAAAAAGAAATCAATACTTTGCGAGTCACCCGTTCTG CTGCCCCCAGCACACTGGACAGTTCTAGCACTACCCCTGTTCTGCTGGGAAGGAAAGGCA AAGAATTTGAGTTCTCACAGTTGCCCCTCAAAGTGGAGTTCCTGGAGTGCAGCGCTAAAG GTGGAAGAGGGGACACTGGCTCTGCTGACATCCAGGACCTGGAGAAGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 711-828, + strand, RNAz p=0.988953 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 711-828, + strand, RNAz p=0.988953 |
| Aligned organism(s): 23 entry(ies) | More info |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
| 1-186, gnl|bosTau2|chr1 (88623285-88623100) | |
| 1-186, gnl|Hg17|chr3 (135007358-135007544) | |
| 1-186, gnl|Mm7|chr9 (102916196-102916015) | |
| 439-579, gnl|bosTau2|chr1 (88378526-88378386) | |
| 439-579, gnl|Hg17|chr3 (135017128-135017268) | |
| 439-579, gnl|Mm7|chr9 (102906456-102906316) | |
| 635-828, gnl|bosTau2|chr1 (88399345-88399538) | |
| 635-828, gnl|canFam2|chr23 (33763728-33763968) | |
| 635-828, gnl|danRer3|chr21 (33363645-33363863) | |
| 635-828, gnl|echTel1|scaffold_325115 (2782-2556) | |
| 635-828, gnl|fr1|chrUn (183742156-183741951) | |
| 635-828, gnl|galGal2|chr9 (9018716-9018966) | |
| 635-828, gnl|hg17|chr3 (135021084-135021324) | |
| 635-828, gnl|Hg17|chr3 (135021095-135021288) | |
| 635-828, gnl|mm7|chr9 (102904536-102904298) | |
| 635-828, gnl|Mm7|chr9 (102904524-102904331) | |
| 635-828, gnl|monDom2|scaffold_24 (27185260-27185493) | |
| 635-828, gnl|oryCun1|scaffold_166965 (4382-4146) | |
| 635-828, gnl|panTro1|chr2_random (12657950-12657710) | |
| 635-828, gnl|rheMac2|chr2 (153929679-153929439) | |
| 635-828, gnl|rn3|chr8 (108216429-108216191) | |
| 635-828, gnl|tetNig1|chr16 (1843341-1843131) | |
| 635-828, gnl|xenTro1|scaffold_346 (956593-956833) |
| Aligned organism(s): 23 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-186, gnl|bosTau2|chr1 (88623285-88623100) | |
| 1-186, gnl|Hg17|chr3 (135007358-135007544) | |
| 1-186, gnl|Mm7|chr9 (102916196-102916015) | |
| 439-579, gnl|bosTau2|chr1 (88378526-88378386) | |
| 439-579, gnl|Hg17|chr3 (135017128-135017268) | |
| 439-579, gnl|Mm7|chr9 (102906456-102906316) | |
| 635-828, gnl|bosTau2|chr1 (88399345-88399538) | |
| 635-828, gnl|canFam2|chr23 (33763728-33763968) | |
| 635-828, gnl|danRer3|chr21 (33363645-33363863) | |
| 635-828, gnl|echTel1|scaffold_325115 (2782-2556) | |
| 635-828, gnl|fr1|chrUn (183742156-183741951) | |
| 635-828, gnl|galGal2|chr9 (9018716-9018966) | |
| 635-828, gnl|hg17|chr3 (135021084-135021324) | |
| 635-828, gnl|Hg17|chr3 (135021095-135021288) | |
| 635-828, gnl|mm7|chr9 (102904536-102904298) | |
| 635-828, gnl|Mm7|chr9 (102904524-102904331) | |
| 635-828, gnl|monDom2|scaffold_24 (27185260-27185493) | |
| 635-828, gnl|oryCun1|scaffold_166965 (4382-4146) | |
| 635-828, gnl|panTro1|chr2_random (12657950-12657710) | |
| 635-828, gnl|rheMac2|chr2 (153929679-153929439) | |
| 635-828, gnl|rn3|chr8 (108216429-108216191) | |
| 635-828, gnl|tetNig1|chr16 (1843341-1843131) | |
| 635-828, gnl|xenTro1|scaffold_346 (956593-956833) |