Ss1.1-Pig1-108H18.5
|
CATCATTTATCTGAACGATTCGGTCTATGATGGAGCTGTTGGGTACAGCATGACTGAAGG
GCTGGGCCAGTTGACAGATGGGGTATCTGGCCTGGATGATTTCACCCAGACCCATGAGTA
CCATGTGTGGCCGGGCTATGACTACGTGGGCTGGAGGAATGAGAGTGCCACCAATGGCTA
CATAGAGATCATGTTTGAATTTGACCGCATCAGGAATTTTACTACTATGAAGGTCCACTG
CAACAACATGTTTGCTAAAGGTGTGAAGATTTTTAAGGAAGTACAGTGCTACTTCCGCTC
CGAAGCCAATGAATGGGAACCTAACGCTGTCTCCTTCCCCCTTGTCCTGGATGATGTGAA
CCCCAGTGCTCGGTTCGTCACAGTGCCCCTCCACCACCGCATGGCCAGTGCCATAAAGTG
CCAGTACCATTTTGCTGACACCTGGATGATGTTCAGTGAGATCACCTTCCAATCAGATGC
TGCAATGTACAACAACTCTGGAGCCTTGCCCACATCACCCGTGGCGCCCACAACCTATGA
TCCAATGCTTAAAGTTGATGACAGCAACACTCGAATCCTGATTGGCTGCTTGGTGGCCAT
CATCTTCATCCTCCTGGCCATCATTGTCATCATCCTCTGGAGGCAGTTCTGGCAGAAAAT
GCTGGAGAAGGCTTCCCGGAGGATGCTGGATGATGAAATGACAGTCAGCCTCTCCCTGCC
AAGCGAGTCTAGCATGTTCAACAACAACCGTTCCTCATCGCCAAGTGAACAGGAATCCAA
CTCCACTTATGATCGCATCTTTCCCCTTCGCCCTGA
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
CATCATTTATCTGAACGATTCGGTCTATGATGGAGCTGTTGGGTACAGCATGACTGAAGG
GCTGGGCCAGTTGACAGATGGGGTATCTGGCCTGGATGATTTCACCCAGACCCATGAGTA
CCATGTGTGGCCGGGCTATGACTACGTGGGCTGGAGGAATGAGAGTGCCACCAATGGCTA
CATAGAGATCATGTTTGAATTTGACCGCATCAGGAATTTTACTACTATGAAGGTCCACTG
CAACAACATGTTTGCTAAAGGTGTGAAGATTTTTAAGGAAGTACAGTGCTACTTCCGCTC
CGAAGCCAATGAATGGGAACCTAACGCTGTCTCCTTCCCCCTTGTCCTGGATGATGTGAA
CCCCAGTGCTCGGTTCGTCACAGTGCCCCTCCACCACCGCATGGCCAGTGCCATAAAGTG
CCAGTACCATTTTGCTGACACCTGGATGATGTTCAGTGAGATCACCTTCCAATCAGATGC
TGCAATGTACAACAACTCTGGAGCCTTGCCCACATCACCCGTGGCGCCCACAACCTATGA
TCCAATGCTTAAAGTTGATGACAGCAACACTCGAATCCTGATTGGCTGCTTGGTGGCCAT
CATCTTCATCCTCCTGGCCATCATTGTCATCATCCTCTGGAGGCAGTTCTGGCAGAAAAT
GCTGGAGAAGGCTTCCCGGAGGATGCTGGATGATGAAATGACAGTCAGCCTCTCCCTGCC
AAGCGAGTCTAGCATGTTCAACAACAACCGTTCCTCATCGCCAAGTGAACAGGAATCCAA
CTCCACTTATGATCGCATCTTTCCCCTTCGCCCTGA
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
46-235, gnl|bosTau2|chr3 (7483712-7483901) |
|
46-235, gnl|canFam2|chr38 (23031450-23031256) |
|
46-235, gnl|danRer3|chr16 (21703238-21703041) |
|
46-235, gnl|dasNov1|scaffold_16895 (40043-40237) |
|
46-235, gnl|echTel1|scaffold_204777 (3951-3757) |
|
46-235, gnl|fr1|chrUn (71396061-71396255) |
|
46-235, gnl|galGal2|chr8 (3742444-3742253) |
|
46-235, gnl|hg17|chr1 (159461242-159461436) |
|
46-235, gnl|Hg17|chr1 (159461241-159461430) |
|
46-235, gnl|loxAfr1|scaffold_10236 (1008-814) |
|
46-235, gnl|mm7|chr1 (169978492-169978298) |
|
46-235, gnl|Mm7|chr1 (169978491-169978302) |
|
46-235, gnl|monDom2|scaffold_16 (12613339-12613533) |
|
46-235, gnl|oryCun1|scaffold_203938 (49059-48865) |
|
46-235, gnl|panTro1|chr1 (141660882-141661076) |
|
46-235, gnl|rheMac2|chr1 (141311203-141311397) |
|
46-235, gnl|rn3|chr13 (85838404-85838210) |
|
46-235, gnl|tetNig1|chr1_random (3050485-3050293) |
|
46-235, gnl|xenTro1|scaffold_160 (784998-785192) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
46-235, gnl|bosTau2|chr3 (7483712-7483901) |
|
46-235, gnl|canFam2|chr38 (23031450-23031256) |
|
46-235, gnl|danRer3|chr16 (21703238-21703041) |
|
46-235, gnl|dasNov1|scaffold_16895 (40043-40237) |
|
46-235, gnl|echTel1|scaffold_204777 (3951-3757) |
|
46-235, gnl|fr1|chrUn (71396061-71396255) |
|
46-235, gnl|galGal2|chr8 (3742444-3742253) |
|
46-235, gnl|hg17|chr1 (159461242-159461436) |
|
46-235, gnl|Hg17|chr1 (159461241-159461430) |
|
46-235, gnl|loxAfr1|scaffold_10236 (1008-814) |
|
46-235, gnl|mm7|chr1 (169978492-169978298) |
|
46-235, gnl|Mm7|chr1 (169978491-169978302) |
|
46-235, gnl|monDom2|scaffold_16 (12613339-12613533) |
|
46-235, gnl|oryCun1|scaffold_203938 (49059-48865) |
|
46-235, gnl|panTro1|chr1 (141660882-141661076) |
|
46-235, gnl|rheMac2|chr1 (141311203-141311397) |
|
46-235, gnl|rn3|chr13 (85838404-85838210) |
|
46-235, gnl|tetNig1|chr1_random (3050485-3050293) |
|
46-235, gnl|xenTro1|scaffold_160 (784998-785192) |
