Non-Coding RNA Search

Ss1.1-Pig1-109E07.5

Sequence:


               
               GAAAAAAAATAAACGCTAGATTGAAAGTAGCAATAACTGGATTCTGCTGTCTTCCTCTGA
CCTTGAAAAAGATATGTAAGTTCTCTGTCTCTTCTCTAGACCTGGGTTAATATGTGTTTC
CTAGATGCTAATATGTGTTGTGCAGATGAGATTAACCTACTGAAGAGCTCTGAACTCCTT
AAGGAACGGTGTCAAAGCAATAAAATGCCATACTGTTATTACAGCCAAGATAGAGAGGCG
GAGAAGACAGAGCTACATTTTCTTCCTTAATCTTCTACGACCTTCGGATGCTCCTGTTTC
CTTTGGAGCCCCCTCTGTTCCTTAGCTTGGAGCTGTGGGGACTGTGCCTGGGGGCAGGAA
GAATGCCTTCCGCTCTCTGAAACTGTGTTGCTGGGGAAGGCCTTTGTAGGCCCATCCTTT
CGGGAACCAGTCAGCGTGTCTCTGGGTGTGCTGAGTGAGGGCAGCACAGGATCTGCACAT
AGAAGGCCCTCTGCTCCCCAGGCCCAGGGGAGGCAGCCATGGACCCTGTGCTTCTTCACG
GCTTGCCCACTCCTCCTTCACAGAACCCACCCCCGGGTGCCCAGGCTCCTCCGACCACCC
TCCATGAGGGAGGAAAGTGAATCCCAAGAGGCCAACACTTCCTGCCGTCCAGTCGACTGG
GGACACTTTCTGAGCAGTCCAGGAGTGTGAGCGAGGAACTTCCTGCCTTGGCTACCATGT
CCTTCAGTGCCACCATTCTCTTCTCCCCTCCTGGTGGCAGTGGCGGAGGCGAGACCAGGT
GCTGCTGCTGTGCCTGTAAGAGCGAGACTAGTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GAAAAAAAATAAACGCTAGATTGAAAGTAGCAATAACTGGATTCTGCTGTCTTCCTCTGA
CCTTGAAAAAGATATGTAAGTTCTCTGTCTCTTCTCTAGACCTGGGTTAATATGTGTTTC
CTAGATGCTAATATGTGTTGTGCAGATGAGATTAACCTACTGAAGAGCTCTGAACTCCTT
AAGGAACGGTGTCAAAGCAATAAAATGCCATACTGTTATTACAGCCAAGATAGAGAGGCG
GAGAAGACAGAGCTACATTTTCTTCCTTAATCTTCTACGACCTTCGGATGCTCCTGTTTC
CTTTGGAGCCCCCTCTGTTCCTTAGCTTGGAGCTGTGGGGACTGTGCCTGGGGGCAGGAA
GAATGCCTTCCGCTCTCTGAAACTGTGTTGCTGGGGAAGGCCTTTGTAGGCCCATCCTTT
CGGGAACCAGTCAGCGTGTCTCTGGGTGTGCTGAGTGAGGGCAGCACAGGATCTGCACAT
AGAAGGCCCTCTGCTCCCCAGGCCCAGGGGAGGCAGCCATGGACCCTGTGCTTCTTCACG
GCTTGCCCACTCCTCCTTCACAGAACCCACCCCCGGGTGCCCAGGCTCCTCCGACCACCC
TCCATGAGGGAGGAAAGTGAATCCCAAGAGGCCAACACTTCCTGCCGTCCAGTCGACTGG
GGACACTTTCTGAGCAGTCCAGGAGTGTGAGCGAGGAACTTCCTGCCTTGGCTACCATGT
CCTTCAGTGCCACCATTCTCTTCTCCCCTCCTGGTGGCAGTGGCGGAGGCGAGACCAGGT
GCTGCTGCTGTGCCTGTAAGAGCGAGACTAGTGGGG

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               41-153, - strand, RNAz p=0.603558

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               41-153, - strand, RNAz p=0.603558

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-816, gnl|bosTau2|chr10 (14049399-14050191)
               

               
               2-816, gnl|Hg17|chr14 (22538729-22537982)
               

               
               2-816, gnl|Mm7|chr14 (49462402-49461674)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-816, gnl|bosTau2|chr10 (14049399-14050191)
               

               
               2-816, gnl|Hg17|chr14 (22538729-22537982)
               

               
               2-816, gnl|Mm7|chr14 (49462402-49461674)

	2-816, gnl\|bosTau2\|chr10 (14049399-14050191)
	2-816, gnl\|Hg17\|chr14 (22538729-22537982)
	2-816, gnl\|Mm7\|chr14 (49462402-49461674)