Ss1.1-Pig1-111L02.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| ACAAGCATTGGGAGTGGGGGGCACAAACATGCCATCCATAACCAAGCCCTGTGGGTCCGG GGCCTTTTGTCACTGTCCCCCTTACCTGCACCTTCCTCAGGCCCAGCTCAGCTCTCCTCT CCCCCTTGAAGCTGCTGCGAATGCCTCAGCCTCCATGACCTAGTCTGGATGTCTGTGGCC CTTGCCTGCTGATTTGGCAGGTACTCCCCCATCCAGGGAGGCCACACACACAGAGCCCAG CCGGCCCAAGTACACCCCACCTCTCCACCGGCACAATGTCTTCAAGCGCCACAGCATGCG GGAGGAGGACTTCATCCGGCCCAGCAGCCGGGAGGAGGCCCAGCAGCTGTGGGAGGCCGA GAGGATCAAGATGCGGCAGCTCCTGGACAAGCAGCAGAAGCAGATGGTGGAAGATTACCA GTGGCTGAGGCAGGAGGAGAAATCCTTGGACCCCATGGTTTACATGAACGATAAGTCCCC GTTGACCCCAGAGAAGGAGGCCGGCTACACGGAGTTCACTGGGCCCCCGCAGAAGCCGCC ACGCCTGGGAGCGCAGTCCATCCAGCCCACAGCCAACCTGGACCGGACCGACGACCTGGT GTACCTCAATGTCATGGAGCTGGTGCGGGCTGTGCTGGACCTCAAGAACAAGCTCTGCCA GCTGCCCCCCGAGGGCTACGTGGTGGTGGTGAAGAACGTGGGCCTGACCCTGCGGAAGCT CATCGGGAGTGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| ACAAGCATTGGGAGTGGGGGGCACAAACATGCCATCCATAACCAAGCCCTGTGGGTCCGG GGCCTTTTGTCACTGTCCCCCTTACCTGCACCTTCCTCAGGCCCAGCTCAGCTCTCCTCT CCCCCTTGAAGCTGCTGCGAATGCCTCAGCCTCCATGACCTAGTCTGGATGTCTGTGGCC CTTGCCTGCTGATTTGGCAGGTACTCCCCCATCCAGGGAGGCCACACACACAGAGCCCAG CCGGCCCAAGTACACCCCACCTCTCCACCGGCACAATGTCTTCAAGCGCCACAGCATGCG GGAGGAGGACTTCATCCGGCCCAGCAGCCGGGAGGAGGCCCAGCAGCTGTGGGAGGCCGA GAGGATCAAGATGCGGCAGCTCCTGGACAAGCAGCAGAAGCAGATGGTGGAAGATTACCA GTGGCTGAGGCAGGAGGAGAAATCCTTGGACCCCATGGTTTACATGAACGATAAGTCCCC GTTGACCCCAGAGAAGGAGGCCGGCTACACGGAGTTCACTGGGCCCCCGCAGAAGCCGCC ACGCCTGGGAGCGCAGTCCATCCAGCCCACAGCCAACCTGGACCGGACCGACGACCTGGT GTACCTCAATGTCATGGAGCTGGTGCGGGCTGTGCTGGACCTCAAGAACAAGCTCTGCCA GCTGCCCCCCGAGGGCTACGTGGTGGTGGTGAAGAACGTGGGCCTGACCCTGCGGAAGCT CATCGGGAGTGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 554-673, - strand, RNAz p=0.632244 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 554-673, - strand, RNAz p=0.632244 |
| Aligned organism(s): 39 entry(ies) | More info |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
| 17-218, gnl|bosTau2|chr5 (34022188-34021972) | |
| 17-218, gnl|Hg17|chr8 (27357156-27357354) | |
| 301-449, gnl|bosTau2|chr5 (34014014-34013866) | |
| 301-449, gnl|canFam2|chr25 (33132121-33131939) | |
| 301-449, gnl|danRer3|chr13 (20009979-20010135) | |
| 301-449, gnl|dasNov1|scaffold_108592 (4480-4300) | |
| 301-449, gnl|echTel1|scaffold_255213 (643-467) | |
| 301-449, gnl|fr1|chrUn (63063130-63062966) | |
| 301-449, gnl|galGal2|chr3 (103072869-103073045) | |
| 301-449, gnl|hg17|chr8 (27364158-27364340) | |
| 301-449, gnl|Hg17|chr8 (27364182-27364330) | |
| 301-449, gnl|mm7|chr14 (61019156-61018986) | |
| 301-449, gnl|Mm7|chr14 (61019142-61018994) | |
| 301-449, gnl|monDom2|scaffold_1 (153155038-153155209) | |
| 301-449, gnl|oryCun1|scaffold_161432 (16239-16417) | |
| 301-449, gnl|panTro1|chr7 (28336327-28336509) | |
| 301-449, gnl|rheMac2|chr8 (27600490-27600671) | |
| 301-449, gnl|rn3|chr15 (45610297-45610127) | |
| 301-449, gnl|tetNig1|chr14 (5469928-5470093) | |
| 301-449, gnl|xenTro1|scaffold_391 (133114-133290) | |
| 554-694, gnl|bosTau2|chr5 (34010015-34009875) | |
| 554-694, gnl|canFam2|chr25 (33129056-33128896) | |
| 554-694, gnl|danRer3|chr13 (20011792-20011931) | |
| 554-694, gnl|dasNov1|scaffold_108592 (1292-1138) | |
| 554-694, gnl|echTel1|scaffold_297505 (36456-36616) | |
| 554-694, gnl|fr1|chrUn (63062139-63061998) | |
| 554-694, gnl|galGal2|chr3 (103074937-103075097) | |
| 554-694, gnl|hg17|chr8 (27367585-27367739) | |
| 554-694, gnl|Hg17|chr8 (27367586-27367725) | |
| 554-694, gnl|loxAfr1|scaffold_217323 (836-680) | |
| 554-694, gnl|mm7|chr14 (61016896-61016741) | |
| 554-694, gnl|Mm7|chr14 (61016893-61016754) | |
| 554-694, gnl|monDom2|scaffold_1 (153161403-153161553) | |
| 554-694, gnl|oryCun1|scaffold_70116 (3045-2892) | |
| 554-694, gnl|panTro1|chr7 (28339750-28339904) | |
| 554-694, gnl|rheMac2|chr8 (27603913-27604067) | |
| 554-694, gnl|rn3|chr15 (45608088-45607934) | |
| 554-694, gnl|tetNig1|chr14 (5470761-5470892) | |
| 554-694, gnl|xenTro1|scaffold_391 (136390-136557) |
| Aligned organism(s): 39 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 17-218, gnl|bosTau2|chr5 (34022188-34021972) | |
| 17-218, gnl|Hg17|chr8 (27357156-27357354) | |
| 301-449, gnl|bosTau2|chr5 (34014014-34013866) | |
| 301-449, gnl|canFam2|chr25 (33132121-33131939) | |
| 301-449, gnl|danRer3|chr13 (20009979-20010135) | |
| 301-449, gnl|dasNov1|scaffold_108592 (4480-4300) | |
| 301-449, gnl|echTel1|scaffold_255213 (643-467) | |
| 301-449, gnl|fr1|chrUn (63063130-63062966) | |
| 301-449, gnl|galGal2|chr3 (103072869-103073045) | |
| 301-449, gnl|hg17|chr8 (27364158-27364340) | |
| 301-449, gnl|Hg17|chr8 (27364182-27364330) | |
| 301-449, gnl|mm7|chr14 (61019156-61018986) | |
| 301-449, gnl|Mm7|chr14 (61019142-61018994) | |
| 301-449, gnl|monDom2|scaffold_1 (153155038-153155209) | |
| 301-449, gnl|oryCun1|scaffold_161432 (16239-16417) | |
| 301-449, gnl|panTro1|chr7 (28336327-28336509) | |
| 301-449, gnl|rheMac2|chr8 (27600490-27600671) | |
| 301-449, gnl|rn3|chr15 (45610297-45610127) | |
| 301-449, gnl|tetNig1|chr14 (5469928-5470093) | |
| 301-449, gnl|xenTro1|scaffold_391 (133114-133290) | |
| 554-694, gnl|bosTau2|chr5 (34010015-34009875) | |
| 554-694, gnl|canFam2|chr25 (33129056-33128896) | |
| 554-694, gnl|danRer3|chr13 (20011792-20011931) | |
| 554-694, gnl|dasNov1|scaffold_108592 (1292-1138) | |
| 554-694, gnl|echTel1|scaffold_297505 (36456-36616) | |
| 554-694, gnl|fr1|chrUn (63062139-63061998) | |
| 554-694, gnl|galGal2|chr3 (103074937-103075097) | |
| 554-694, gnl|hg17|chr8 (27367585-27367739) | |
| 554-694, gnl|Hg17|chr8 (27367586-27367725) | |
| 554-694, gnl|loxAfr1|scaffold_217323 (836-680) | |
| 554-694, gnl|mm7|chr14 (61016896-61016741) | |
| 554-694, gnl|Mm7|chr14 (61016893-61016754) | |
| 554-694, gnl|monDom2|scaffold_1 (153161403-153161553) | |
| 554-694, gnl|oryCun1|scaffold_70116 (3045-2892) | |
| 554-694, gnl|panTro1|chr7 (28339750-28339904) | |
| 554-694, gnl|rheMac2|chr8 (27603913-27604067) | |
| 554-694, gnl|rn3|chr15 (45608088-45607934) | |
| 554-694, gnl|tetNig1|chr14 (5470761-5470892) | |
| 554-694, gnl|xenTro1|scaffold_391 (136390-136557) |