Non-Coding RNA Search

Ss1.1-Pig1-112H08.5

Sequence:


               
               ATCTTCTTTTCAGAGGACAGGGACACCACGGCAGGCCCGGAAGGCCACCCGGCCAAAGAG
GACCCGCCTGCTGCGGCCGAGGATGGACGTGAGAGTGAGCCGTCTGACGAGGAGGCCACG
ACGCTCTCGGCCGAGAGCGGGGACACGGCTGATGAGGACGCGCCGGGCCCAGCCGCGCCG
CCGGAGGACAGCGTGGACCTCCTGGGGCTGCACGCCGAGGCGGGGCCGGCCCCGTGCCCG
CAGGCCCGCGGGGGGCCCCCCAGCAACGCGGACCTACTCAGCTGCCTTCTGGGGGCCCCG
CCACCTGCTCCAGCGGGTACCACAGGCCGTCTGCTGGAAGGGGACACGTCCCTGCTCTTC
TCCAGCCCAGCCCCTCCTCCCAGCGCTCCGACGGCGCCTCGCGAGGCTTCTGCCCCGGCT
GCTGACCCATTCGACCCTCTCCTGCTGCCGTCTGACCCAGTCTCCCAGCCCTGCTCCAGG
CCTGACCTCTTTGGGGAATTTCTGACCTCAGACTCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATCTTCTTTTCAGAGGACAGGGACACCACGGCAGGCCCGGAAGGCCACCCGGCCAAAGAG
GACCCGCCTGCTGCGGCCGAGGATGGACGTGAGAGTGAGCCGTCTGACGAGGAGGCCACG
ACGCTCTCGGCCGAGAGCGGGGACACGGCTGATGAGGACGCGCCGGGCCCAGCCGCGCCG
CCGGAGGACAGCGTGGACCTCCTGGGGCTGCACGCCGAGGCGGGGCCGGCCCCGTGCCCG
CAGGCCCGCGGGGGGCCCCCCAGCAACGCGGACCTACTCAGCTGCCTTCTGGGGGCCCCG
CCACCTGCTCCAGCGGGTACCACAGGCCGTCTGCTGGAAGGGGACACGTCCCTGCTCTTC
TCCAGCCCAGCCCCTCCTCCCAGCGCTCCGACGGCGCCTCGCGAGGCTTCTGCCCCGGCT
GCTGACCCATTCGACCCTCTCCTGCTGCCGTCTGACCCAGTCTCCCAGCCCTGCTCCAGG
CCTGACCTCTTTGGGGAATTTCTGACCTCAGACTCT

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

Help | Less info


               
               248-367, - strand, RNAz p=0.907874

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               248-367, - strand, RNAz p=0.907874

Predicted microRNA(s): 2 entry(ies)

More info

Predicted microRNA(s): 2 entry(ies)

Help | Less info


               
               314-387, - strand, RNAmicro p=0.997746
               

               
               311-431, + strand, RNAmicro p=0.927309

Predicted microRNA(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               314-387, - strand, RNAmicro p=0.997746
               

               
               311-431, + strand, RNAmicro p=0.927309

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               4-392, gnl|bosTau2|chr6 (63644964-63645352)
               

               
               4-392, gnl|Hg17|chr4 (851062-850592)
               

               
               4-392, gnl|Mm7|chr5 (107764040-107763628)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-392, gnl|bosTau2|chr6 (63644964-63645352)
               

               
               4-392, gnl|Hg17|chr4 (851062-850592)
               

               
               4-392, gnl|Mm7|chr5 (107764040-107763628)

	314-387, - strand, RNAmicro p=0.997746
	311-431, + strand, RNAmicro p=0.927309

	4-392, gnl\|bosTau2\|chr6 (63644964-63645352)
	4-392, gnl\|Hg17\|chr4 (851062-850592)
	4-392, gnl\|Mm7\|chr5 (107764040-107763628)