Non-Coding RNA Search

Ss1.1-Pig1-113O19.5

Sequence:


               
               CCTTGTGAGCTTCTCTTTGGACTGTCCTCCGGGCAGGGCACCCTTCCTAGCGCTGCTGGG
CGGTGGTCGGGCCATCGATCCACTAATGGAAGTATATTTGCGTGTAACCCAAATTAGCTT
CTCCTGCGATAGAGCGTAAGAAGCGTGTGTCTTTGGTGACACTCATGTGTCGACTGGGGC
GGGAGTTTCAAGAAAAGGGGTTAAAAAAGAAAAAAAGTGTACAGAGGGGGGGGAGAAGCC
TTGTTGTAAAAGGGGAGCATGTCNGAACTGCTTCTGAGTAACCTTTACCATTTAAGGGCA
TCTACCTGAAAACAGTGAGATTTATACTGGATCGATGGCTATTTTTTTGTGTTTTGCTAT
GAATATAATTACAGTATTTTAATATTTAGTTATTTAATTTGGTCTACTAGTGGGATACAG
AACACACAAATCCAGGGAGACTAAAGCTGGTGGGGCTAAGAGAAGAGTTTAGTTTACAGA
AAAAAGGCTTTGGTGGTGGGATTTTTTAAAACTGTGTGTTATGTACATATATATGTATAT
ATATAAAAAACAAATGAAACAATTAATCTAGATTTTAACATTCTCAGATATTTAGTGATA
ATATTACGAACAATTCTAAAAGCCCTGTGATTTGAAAAATGTAGACGCATCTATGGCCCA
AGAAAGGAAGGACAGGCCTTCACACCTCACGGAGCATCGCAGGAAGGGCAGCGGCTTTGG
CTTTCCCGATTCTCCATCTTCAGCCCTGGTGACAGGCACACTTATGCACTAAAATGCACA
TATATGCACATGCATTCAAAAAATAGGCATTGGTACAATAGCAGTCTTGTACCTAATGGG
CTGAAACCAGCTTAAGAACAAACTTGTTCTTCCTGATAACTAGGTCTCCAAGAGAAAATA
TAAAGGCTGCTGTAGTGCCTTATGCTTACTAAATTTAAACCTTTATTTACCTAGGGTGGA
GCCTACAGTTGATGATTACATATCAAAATTGATGAAGACACTTCCATTTCTAAAAGTTCA
AATATACCTGTTAATAAAAGGATTATTGGCATTAATACTTCAACTTGAAGAGAAGTTGTG
TTCTGTTTTCCTTTCTGTGTCTTCCTCCCCCCCCGCCCCGGGCCCTCCCCTCCTTCCTTC
AATTCTCATAAACAAGGCTGGATGTTCACCAGTTGCAAGAACTGTGCTGTCACACAGTCG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CCTTGTGAGCTTCTCTTTGGACTGTCCTCCGGGCAGGGCACCCTTCCTAGCGCTGCTGGG
CGGTGGTCGGGCCATCGATCCACTAATGGAAGTATATTTGCGTGTAACCCAAATTAGCTT
CTCCTGCGATAGAGCGTAAGAAGCGTGTGTCTTTGGTGACACTCATGTGTCGACTGGGGC
GGGAGTTTCAAGAAAAGGGGTTAAAAAAGAAAAAAAGTGTACAGAGGGGGGGGAGAAGCC
TTGTTGTAAAAGGGGAGCATGTCNGAACTGCTTCTGAGTAACCTTTACCATTTAAGGGCA
TCTACCTGAAAACAGTGAGATTTATACTGGATCGATGGCTATTTTTTTGTGTTTTGCTAT
GAATATAATTACAGTATTTTAATATTTAGTTATTTAATTTGGTCTACTAGTGGGATACAG
AACACACAAATCCAGGGAGACTAAAGCTGGTGGGGCTAAGAGAAGAGTTTAGTTTACAGA
AAAAAGGCTTTGGTGGTGGGATTTTTTAAAACTGTGTGTTATGTACATATATATGTATAT
ATATAAAAAACAAATGAAACAATTAATCTAGATTTTAACATTCTCAGATATTTAGTGATA
ATATTACGAACAATTCTAAAAGCCCTGTGATTTGAAAAATGTAGACGCATCTATGGCCCA
AGAAAGGAAGGACAGGCCTTCACACCTCACGGAGCATCGCAGGAAGGGCAGCGGCTTTGG
CTTTCCCGATTCTCCATCTTCAGCCCTGGTGACAGGCACACTTATGCACTAAAATGCACA
TATATGCACATGCATTCAAAAAATAGGCATTGGTACAATAGCAGTCTTGTACCTAATGGG
CTGAAACCAGCTTAAGAACAAACTTGTTCTTCCTGATAACTAGGTCTCCAAGAGAAAATA
TAAAGGCTGCTGTAGTGCCTTATGCTTACTAAATTTAAACCTTTATTTACCTAGGGTGGA
GCCTACAGTTGATGATTACATATCAAAATTGATGAAGACACTTCCATTTCTAAAAGTTCA
AATATACCTGTTAATAAAAGGATTATTGGCATTAATACTTCAACTTGAAGAGAAGTTGTG
TTCTGTTTTCCTTTCTGTGTCTTCCTCCCCCCCCGCCCCGGGCCCTCCCCTCCTTCCTTC
AATTCTCATAAACAAGGCTGGATGTTCACCAGTTGCAAGAACTGTGCTGTCACACAGTCG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               716-953, - strand, RNAz p=0.999315
               

               
               990-1109, - strand, RNAz p=0.999545

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               716-953, - strand, RNAz p=0.999315
               

               
               990-1109, - strand, RNAz p=0.999545

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

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               716-952, DA138451 BRALZ2 Homo sapiens cDNA clone BRALZ2012414 5', mRNA 
(dbj|DA138451.1|), blast E-value=0, identity=90.57% 
               

               
               716-952, DA368299 BRSTN2 Homo sapiens cDNA clone BRSTN2016749 5', mRNA 
(dbj|DA368299.1|), blast E-value=0, identity=90.57% 
               

               
               716-952, DA679866 NHNPC2 Homo sapiens cDNA clone NHNPC2002223 5', mRNA 
(dbj|DA679866.1|), blast E-value=0, identity=90.57% 
               

               
               716-952, UI-CF-EN0-acm-a-09-0-UI.s1 UI-CF-EN0 Homo sapiens cDNA clone 
(gb|BU683585.1|), blast E-value=0, identity=90.57% 
               

               
               716-950, CH3#021_C12T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU748622.1|), blast E-value=0, identity=93.64% 
               

               
               716-952, K-EST0222554 L17N670205n1 Homo sapiens cDNA clone (gb|CB162073.1|), 
blast E-value=0, identity=90.57%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               716-952, DA138451 BRALZ2 Homo sapiens cDNA clone BRALZ2012414 5', mRNA 
(dbj|DA138451.1|), blast E-value=0, identity=90.57% 
               

               
               716-952, DA368299 BRSTN2 Homo sapiens cDNA clone BRSTN2016749 5', mRNA 
(dbj|DA368299.1|), blast E-value=0, identity=90.57% 
               

               
               716-952, DA679866 NHNPC2 Homo sapiens cDNA clone NHNPC2002223 5', mRNA 
(dbj|DA679866.1|), blast E-value=0, identity=90.57% 
               

               
               716-952, UI-CF-EN0-acm-a-09-0-UI.s1 UI-CF-EN0 Homo sapiens cDNA clone 
(gb|BU683585.1|), blast E-value=0, identity=90.57% 
               

               
               716-950, CH3#021_C12T3 Canine heart normalized cDNA Library in pBluescript 
(gb|BU748622.1|), blast E-value=0, identity=93.64% 
               

               
               716-952, K-EST0222554 L17N670205n1 Homo sapiens cDNA clone (gb|CB162073.1|), 
blast E-value=0, identity=90.57%

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               79-1200, gnl|bosTau2|chr6 (57992911-57994043)
               

               
               79-1200, gnl|Hg17|chr4 (85950283-85949131)
               

               
               79-1200, gnl|Mm7|chr5 (101023586-101022515)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               79-1200, gnl|bosTau2|chr6 (57992911-57994043)
               

               
               79-1200, gnl|Hg17|chr4 (85950283-85949131)
               

               
               79-1200, gnl|Mm7|chr5 (101023586-101022515)

	716-953, - strand, RNAz p=0.999315
	990-1109, - strand, RNAz p=0.999545

	716-952, DA138451 BRALZ2 Homo sapiens cDNA clone BRALZ2012414 5', mRNA (dbj\|DA138451.1\|), blast E-value=0, identity=90.57%
	716-952, DA368299 BRSTN2 Homo sapiens cDNA clone BRSTN2016749 5', mRNA (dbj\|DA368299.1\|), blast E-value=0, identity=90.57%
	716-952, DA679866 NHNPC2 Homo sapiens cDNA clone NHNPC2002223 5', mRNA (dbj\|DA679866.1\|), blast E-value=0, identity=90.57%
	716-952, UI-CF-EN0-acm-a-09-0-UI.s1 UI-CF-EN0 Homo sapiens cDNA clone (gb\|BU683585.1\|), blast E-value=0, identity=90.57%
	716-950, CH3#021_C12T3 Canine heart normalized cDNA Library in pBluescript (gb\|BU748622.1\|), blast E-value=0, identity=93.64%
	716-952, K-EST0222554 L17N670205n1 Homo sapiens cDNA clone (gb\|CB162073.1\|), blast E-value=0, identity=90.57%

	79-1200, gnl\|bosTau2\|chr6 (57992911-57994043)
	79-1200, gnl\|Hg17\|chr4 (85950283-85949131)
	79-1200, gnl\|Mm7\|chr5 (101023586-101022515)