Ss1.1-Pig1-114B11.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| TGGAGGACCTGTGGGTGTCTAGCAACGGAGGACGGGGGGTAGGATCCTGGCAACGGCGGG GAGTGGGACCGCAGGAGCGACAATGTGGCTGGAGGTAGGGGGCTCACTGCGAGGGACCTG TGGACACCTGGGCCGGACTATTGGTCTGCCCTGTGGGGCCCTGGGGCCTGGGCCCCGCTG CTGGGGGCCACGTGGGGGTTCCTGGGCCCAAAAACTTCATCAGGATGGGCCTGGCAGGGG TCTGGGTGAGGAGGACATTCGCAAGGCACGGGAGGCACGAATCAGGAAGACGCCCCGGCC CCAGCTGAGTGACCGTGCTCGAGAACGCAAGGTGCCGGCTTCGCGCATCAGCCGCTTGGC CAACTTTGGGGGACTGGCTGTGAGCTTGGGGCTGGGAGCACTGGCTGAGGTGGCCAAGAA TTCCCTGCCCGGAGGACGTCCCCAATCAGAGGGAGGCTCCCGGCCGGGCTCCAGCCCTTT CCTGTCGGAGGCCAATGCTGAGCGGATCGTGCAGACCTTGTGTACAGTTCGGGGGGCCGC CCTCAAGGTTGGCCAAATGCTCAGCATCCAGGACAACAGCTTCATCAGCCCCCAGCTGCA ACGCATCTTCGAGCGTGTCCGTCAGAGCGCCGACTTTATGCCCCGCTGGCAGATGCTGAG AGTTCTCGAAGAGGAGCTCGGCAAGGACTGGCAGGCCAAGGTGGCCTCTTTGGAGGAGGT GCCCTTTGCAGCTGCCTCAATCGGACAGGTGCACCANGGCGTGCTGAGGGATGGGACAGA GGTGGCCGTGAAGATCCAGTACCCGGGCGTTGCCCAAAGCATCCAGAGTGACGTCCAGAA CCTGCTGGCGGT |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| TGGAGGACCTGTGGGTGTCTAGCAACGGAGGACGGGGGGTAGGATCCTGGCAACGGCGGG GAGTGGGACCGCAGGAGCGACAATGTGGCTGGAGGTAGGGGGCTCACTGCGAGGGACCTG TGGACACCTGGGCCGGACTATTGGTCTGCCCTGTGGGGCCCTGGGGCCTGGGCCCCGCTG CTGGGGGCCACGTGGGGGTTCCTGGGCCCAAAAACTTCATCAGGATGGGCCTGGCAGGGG TCTGGGTGAGGAGGACATTCGCAAGGCACGGGAGGCACGAATCAGGAAGACGCCCCGGCC CCAGCTGAGTGACCGTGCTCGAGAACGCAAGGTGCCGGCTTCGCGCATCAGCCGCTTGGC CAACTTTGGGGGACTGGCTGTGAGCTTGGGGCTGGGAGCACTGGCTGAGGTGGCCAAGAA TTCCCTGCCCGGAGGACGTCCCCAATCAGAGGGAGGCTCCCGGCCGGGCTCCAGCCCTTT CCTGTCGGAGGCCAATGCTGAGCGGATCGTGCAGACCTTGTGTACAGTTCGGGGGGCCGC CCTCAAGGTTGGCCAAATGCTCAGCATCCAGGACAACAGCTTCATCAGCCCCCAGCTGCA ACGCATCTTCGAGCGTGTCCGTCAGAGCGCCGACTTTATGCCCCGCTGGCAGATGCTGAG AGTTCTCGAAGAGGAGCTCGGCAAGGACTGGCAGGCCAAGGTGGCCTCTTTGGAGGAGGT GCCCTTTGCAGCTGCCTCAATCGGACAGGTGCACCANGGCGTGCTGAGGGATGGGACAGA GGTGGCCGTGAAGATCCAGTACCCGGGCGTTGCCCAAAGCATCCAGAGTGACGTCCAGAA CCTGCTGGCGGT |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 447-565, + strand, RNAz p=0.788598 | |
| 658-776, + strand, RNAz p=0.808742 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 447-565, + strand, RNAz p=0.788598 | |
| 658-776, + strand, RNAz p=0.808742 |
| Aligned organism(s): 33 entry(ies) | More info |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
| 184-304, gnl|bosTau2|chr18 (45429492-45429372) | |
| 184-304, gnl|canFam2|chr1 (115966794-115966602) | |
| 184-304, gnl|echTel1|scaffold_237503 (2959-2812) | |
| 184-304, gnl|fr1|chrUn (2576071-2576263) | |
| 184-304, gnl|hg17|chr19 (45911906-45912097) | |
| 184-304, gnl|Hg17|chr19 (45912143-45912023) | |
| 184-304, gnl|loxAfr1|scaffold_13008 (22878-23044) | |
| 184-304, gnl|mm7|chr7 (24152776-24152608) | |
| 184-304, gnl|Mm7|chr7 (24152560-24152680) | |
| 184-304, gnl|monDom2|scaffold_149 (355137-355369) | |
| 184-304, gnl|oryCun1|scaffold_129477 (3738-3541) | |
| 184-304, gnl|rheMac2|chr19 (47079284-47079475) | |
| 184-304, gnl|rn3|chr1 (82389473-82389299) | |
| 447-585, gnl|bosTau2|chr18 (45424267-45424127) | |
| 447-585, gnl|Hg17|chr19 (45903195-45903061) | |
| 447-585, gnl|Mm7|chr7 (24158653-24158787) | |
| 658-799, gnl|bosTau2|chr18 (45422683-45422542) | |
| 658-799, gnl|canFam2|chr1 (115974414-115974253) | |
| 658-799, gnl|danRer3|chr20 (8072068-8072231) | |
| 658-799, gnl|dasNov1|scaffold_194844 (1270-1110) | |
| 658-799, gnl|echTel1|scaffold_297113 (9583-9739) | |
| 658-799, gnl|fr1|chrUn (197467869-197467714) | |
| 658-799, gnl|hg17|chr19 (45901456-45901617) | |
| 658-799, gnl|Hg17|chr19 (45901601-45901460) | |
| 658-799, gnl|loxAfr1|scaffold_55431 (1299-1138) | |
| 658-799, gnl|mm7|chr7 (24160984-24160823) | |
| 658-799, gnl|Mm7|chr7 (24160837-24160978) | |
| 658-799, gnl|monDom2|scaffold_149 (349750-349913) | |
| 658-799, gnl|oryCun1|scaffold_194522 (5974-6131) | |
| 658-799, gnl|panTro1|chr20 (42862082-42862243) | |
| 658-799, gnl|rheMac2|chr19 (47067724-47067885) | |
| 658-799, gnl|rn3|chr1 (82397167-82397006) | |
| 658-799, gnl|tetNig1|chr16 (7843624-7843476) |
| Aligned organism(s): 33 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 184-304, gnl|bosTau2|chr18 (45429492-45429372) | |
| 184-304, gnl|canFam2|chr1 (115966794-115966602) | |
| 184-304, gnl|echTel1|scaffold_237503 (2959-2812) | |
| 184-304, gnl|fr1|chrUn (2576071-2576263) | |
| 184-304, gnl|hg17|chr19 (45911906-45912097) | |
| 184-304, gnl|Hg17|chr19 (45912143-45912023) | |
| 184-304, gnl|loxAfr1|scaffold_13008 (22878-23044) | |
| 184-304, gnl|mm7|chr7 (24152776-24152608) | |
| 184-304, gnl|Mm7|chr7 (24152560-24152680) | |
| 184-304, gnl|monDom2|scaffold_149 (355137-355369) | |
| 184-304, gnl|oryCun1|scaffold_129477 (3738-3541) | |
| 184-304, gnl|rheMac2|chr19 (47079284-47079475) | |
| 184-304, gnl|rn3|chr1 (82389473-82389299) | |
| 447-585, gnl|bosTau2|chr18 (45424267-45424127) | |
| 447-585, gnl|Hg17|chr19 (45903195-45903061) | |
| 447-585, gnl|Mm7|chr7 (24158653-24158787) | |
| 658-799, gnl|bosTau2|chr18 (45422683-45422542) | |
| 658-799, gnl|canFam2|chr1 (115974414-115974253) | |
| 658-799, gnl|danRer3|chr20 (8072068-8072231) | |
| 658-799, gnl|dasNov1|scaffold_194844 (1270-1110) | |
| 658-799, gnl|echTel1|scaffold_297113 (9583-9739) | |
| 658-799, gnl|fr1|chrUn (197467869-197467714) | |
| 658-799, gnl|hg17|chr19 (45901456-45901617) | |
| 658-799, gnl|Hg17|chr19 (45901601-45901460) | |
| 658-799, gnl|loxAfr1|scaffold_55431 (1299-1138) | |
| 658-799, gnl|mm7|chr7 (24160984-24160823) | |
| 658-799, gnl|Mm7|chr7 (24160837-24160978) | |
| 658-799, gnl|monDom2|scaffold_149 (349750-349913) | |
| 658-799, gnl|oryCun1|scaffold_194522 (5974-6131) | |
| 658-799, gnl|panTro1|chr20 (42862082-42862243) | |
| 658-799, gnl|rheMac2|chr19 (47067724-47067885) | |
| 658-799, gnl|rn3|chr1 (82397167-82397006) | |
| 658-799, gnl|tetNig1|chr16 (7843624-7843476) |