Non-Coding RNA Search

Ss1.1-Pig1-114G24.5

Sequence:


               
               CGGCCCGCCACGGGGACATCATCCCGTGGGACTACGACGTGGACCTGGGCATCTACCTGG
AGGACGTGGGCAACTGCGAGCAGCTGCGGGGCGCCGAGGCAGGCTCAGTGGTGGACGAGC
GCGGCTTCGTGTGGGAGAAGGCGGTAGAGGGTGACTTCTTCCGCGTGCAGTACAGCGAGA
GCAACCACCTGCACGTGGACCTGTGGCCCTTCTATCCCCGAAACGGGGTCATGACCAAGG
ACACGTGGCTGGACCACCGGCAGGATGTCGAGTTCCCCGAACACTTCCTGCAGCCTCTCG
TGCCCCTGCCCTTTGCCGGTTTTGTGGCGCAGGCGCCTAACAACTACCGCCGCTTCCTTG
AGCTCAAGTTCGGCCCCGGGGTCATCGAGAACCCTGAGTACCCCAACCCGGCACTCCTGA
GTTTGGCAGCAAGCAGCTGACGCTCCAGTGCCTGCTCCTGGGTCCGGAGAACATTCGGGC
ACAAGGCAAGGCACTGTCTTTTGTCTTGGTGCTGCTGGCATTTGGTGGGTGGGCCAGGGA
TGCCAAGCCGCCCTGCAGGGCTCTGCATGGTCCCGAACATCAAATCCTGCGCCCTGCCCA
AGATTTCCAGAACTGGGGCTCCAGGGCTGGGACAGTTTGGGAAAAGAGGAAGAGTGTAAG
TTCCGGGGCCAGACTGTCGCGATTCCAACCTCGGCTCTTGCACTTGTTCGGTATGTGGAC
CCCTGGCAAGTGTCCCAATTTCGCTGCCTCCGTTTCCTCCCGGATTCAGTGCCAGCCCTC
AGGGTCAAGCACACCCGGAGCCCCAGGACACTTGGCTGTTGGGGTTGCTTCCGCCACTAG
AGGGCGTCTTTGTCCTACCTTGCAGCCAAGACGACTGTCCGCGGGGCCCTCTGTTCCATG
ACTTTCATGTCTCTCGAGCCTTTGGTCCCCTCTCCAGTCTCCTGCGCCTGGTCAGGACAG
GATGACTCTTTCCTTCTTTCAGAAAACGAGCTCCTTCCTCCTGGGAGAGCCCTGTGCGGT
GCATGCTGCTCTTAACCCCATCTTGCACAGAGCAAACAGGCTCAGAGGTCTGAGGGTGCT
CTGGTTAAGAACCTGGTTCTGGGAGTCCCCTGGTGGTCTAGTGGTTAGGAGTCAGAGCTC
CCTCTGTGGCGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGGCCCGCCACGGGGACATCATCCCGTGGGACTACGACGTGGACCTGGGCATCTACCTGG
AGGACGTGGGCAACTGCGAGCAGCTGCGGGGCGCCGAGGCAGGCTCAGTGGTGGACGAGC
GCGGCTTCGTGTGGGAGAAGGCGGTAGAGGGTGACTTCTTCCGCGTGCAGTACAGCGAGA
GCAACCACCTGCACGTGGACCTGTGGCCCTTCTATCCCCGAAACGGGGTCATGACCAAGG
ACACGTGGCTGGACCACCGGCAGGATGTCGAGTTCCCCGAACACTTCCTGCAGCCTCTCG
TGCCCCTGCCCTTTGCCGGTTTTGTGGCGCAGGCGCCTAACAACTACCGCCGCTTCCTTG
AGCTCAAGTTCGGCCCCGGGGTCATCGAGAACCCTGAGTACCCCAACCCGGCACTCCTGA
GTTTGGCAGCAAGCAGCTGACGCTCCAGTGCCTGCTCCTGGGTCCGGAGAACATTCGGGC
ACAAGGCAAGGCACTGTCTTTTGTCTTGGTGCTGCTGGCATTTGGTGGGTGGGCCAGGGA
TGCCAAGCCGCCCTGCAGGGCTCTGCATGGTCCCGAACATCAAATCCTGCGCCCTGCCCA
AGATTTCCAGAACTGGGGCTCCAGGGCTGGGACAGTTTGGGAAAAGAGGAAGAGTGTAAG
TTCCGGGGCCAGACTGTCGCGATTCCAACCTCGGCTCTTGCACTTGTTCGGTATGTGGAC
CCCTGGCAAGTGTCCCAATTTCGCTGCCTCCGTTTCCTCCCGGATTCAGTGCCAGCCCTC
AGGGTCAAGCACACCCGGAGCCCCAGGACACTTGGCTGTTGGGGTTGCTTCCGCCACTAG
AGGGCGTCTTTGTCCTACCTTGCAGCCAAGACGACTGTCCGCGGGGCCCTCTGTTCCATG
ACTTTCATGTCTCTCGAGCCTTTGGTCCCCTCTCCAGTCTCCTGCGCCTGGTCAGGACAG
GATGACTCTTTCCTTCTTTCAGAAAACGAGCTCCTTCCTCCTGGGAGAGCCCTGTGCGGT
GCATGCTGCTCTTAACCCCATCTTGCACAGAGCAAACAGGCTCAGAGGTCTGAGGGTGCT
CTGGTTAAGAACCTGGTTCTGGGAGTCCCCTGGTGGTCTAGTGGTTAGGAGTCAGAGCTC
CCTCTGTGGCGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               120-319, + strand, RNAz p=0.741839
               

               
               794-896, - strand, RNAz p=0.656526

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               120-319, + strand, RNAz p=0.741839
               

               
               794-896, - strand, RNAz p=0.656526

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               140-219, + strand, RNAmicro p=0.997411

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               140-219, + strand, RNAmicro p=0.997411

Aligned organism(s): 9 entry(ies)

More info

Aligned organism(s): 9 entry(ies)

Help | Less info


               
               1-678, gnl|bosTau2|chr18 (49695764-49695101)
               

               
               1-678, gnl|Hg17|chr19 (51951596-51952452)
               

               
               1-678, gnl|Mm7|chr7 (14574576-14573788)
               


               
               739-966, gnl|bosTau2|chr18 (49695089-49694867)
               

               
               739-966, gnl|Hg17|chr19 (51952464-51952713)
               

               
               739-966, gnl|Mm7|chr7 (14573776-14573542)
               


               
               969-1074, gnl|bosTau2|chr18 (49694830-49694722)
               

               
               969-1074, gnl|Hg17|chr19 (51952729-51952858)
               

               
               969-1074, gnl|Mm7|chr7 (14573528-14573430)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-678, gnl|bosTau2|chr18 (49695764-49695101)
               

               
               1-678, gnl|Hg17|chr19 (51951596-51952452)
               

               
               1-678, gnl|Mm7|chr7 (14574576-14573788)
               


               
               739-966, gnl|bosTau2|chr18 (49695089-49694867)
               

               
               739-966, gnl|Hg17|chr19 (51952464-51952713)
               

               
               739-966, gnl|Mm7|chr7 (14573776-14573542)
               


               
               969-1074, gnl|bosTau2|chr18 (49694830-49694722)
               

               
               969-1074, gnl|Hg17|chr19 (51952729-51952858)
               

               
               969-1074, gnl|Mm7|chr7 (14573528-14573430)

	120-319, + strand, RNAz p=0.741839
	794-896, - strand, RNAz p=0.656526

	1-678, gnl\|bosTau2\|chr18 (49695764-49695101)
	1-678, gnl\|Hg17\|chr19 (51951596-51952452)
	1-678, gnl\|Mm7\|chr7 (14574576-14573788)

	739-966, gnl\|bosTau2\|chr18 (49695089-49694867)
	739-966, gnl\|Hg17\|chr19 (51952464-51952713)
	739-966, gnl\|Mm7\|chr7 (14573776-14573542)

	969-1074, gnl\|bosTau2\|chr18 (49694830-49694722)
	969-1074, gnl\|Hg17\|chr19 (51952729-51952858)
	969-1074, gnl\|Mm7\|chr7 (14573528-14573430)