Ss1.1-Pig1-115B12.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| GCGAGGATTGGCGGCAGGAGTACGTGCTTAACGAGTCCGGGAGAATTTACTATGGGACTG AAGCACAGATTGGCGAGCGGACATGGAACTACGGCCAGTTTGACCACGGAGTGCTGGATG CCTGCCTGTACATCCTGGACCGGCGGGGCATGCCATATGCGGGCCGAGGGGACCCAGTCA GTGTCTCCCGGGTCATCTCTGCCATGGTGAACTCCTTGGATGACAATGGGGTCCTGATTG GGAACTGGTCTGGCGATTACTCCCGTGGCACCAACCCATCAGCGTGGGTGGGCAGCGTGG AGATCCTACTCAGCTATCTCCGCACCGGCTATTCTGTCCCCTATGGCCAGTGCTGGGTCT TTGCCGGTGTGACCACCACAGTGCTGCGCTGCCTGGGCCTGGCCACCCGCACTGTCACCA ACTTCAACTCTGCACATGACACGGACACATCCCTCACCATGGACATCTACTTTGATGAGA ACATGAAGCCACTTGAGCACCTGAACCACGACTCTGTTTGGAACTTCCACGTGTGGAATG ACTGCTGGATGAAGAGGCCGGATCTGCCCTCAGGCTTCAACGGGTGGCAGGTTGTGGATG CCACACCCCAGGAGACCAGCAGTGGCATCTTCTGCTGTGGCCCCTGCTCCGTGGAGTCCA TCAAGAATGGCCTGGTCTACATGAAATACGACACGCCATTCATTTTTGCTGAGGTGAACA GTGACAAGGTTTACTGGCAGCGGCAGAACGATGGCAGCTTCAAGATCGTGTACGTGGAGG AGAAGGCCATTGGCACGCTCATTGTCACCAAGGCCATCGGCTCCCATATGCGAGAAGATG TCACCCACATCTATAAGCACCCGGAAGGCTCCGAAGCAGAGAGGAAAGCAGTGGAGACAG CAGCTGCCCATGGCAGCAAACCCAATGTGTACGCCACCCGGGACTCGGCTGAGGATGTGG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| GCGAGGATTGGCGGCAGGAGTACGTGCTTAACGAGTCCGGGAGAATTTACTATGGGACTG AAGCACAGATTGGCGAGCGGACATGGAACTACGGCCAGTTTGACCACGGAGTGCTGGATG CCTGCCTGTACATCCTGGACCGGCGGGGCATGCCATATGCGGGCCGAGGGGACCCAGTCA GTGTCTCCCGGGTCATCTCTGCCATGGTGAACTCCTTGGATGACAATGGGGTCCTGATTG GGAACTGGTCTGGCGATTACTCCCGTGGCACCAACCCATCAGCGTGGGTGGGCAGCGTGG AGATCCTACTCAGCTATCTCCGCACCGGCTATTCTGTCCCCTATGGCCAGTGCTGGGTCT TTGCCGGTGTGACCACCACAGTGCTGCGCTGCCTGGGCCTGGCCACCCGCACTGTCACCA ACTTCAACTCTGCACATGACACGGACACATCCCTCACCATGGACATCTACTTTGATGAGA ACATGAAGCCACTTGAGCACCTGAACCACGACTCTGTTTGGAACTTCCACGTGTGGAATG ACTGCTGGATGAAGAGGCCGGATCTGCCCTCAGGCTTCAACGGGTGGCAGGTTGTGGATG CCACACCCCAGGAGACCAGCAGTGGCATCTTCTGCTGTGGCCCCTGCTCCGTGGAGTCCA TCAAGAATGGCCTGGTCTACATGAAATACGACACGCCATTCATTTTTGCTGAGGTGAACA GTGACAAGGTTTACTGGCAGCGGCAGAACGATGGCAGCTTCAAGATCGTGTACGTGGAGG AGAAGGCCATTGGCACGCTCATTGTCACCAAGGCCATCGGCTCCCATATGCGAGAAGATG TCACCCACATCTATAAGCACCCGGAAGGCTCCGAAGCAGAGAGGAAAGCAGTGGAGACAG CAGCTGCCCATGGCAGCAAACCCAATGTGTACGCCACCCGGGACTCGGCTGAGGATGTGG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 520-625, + strand, RNAz p=0.822084 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 520-625, + strand, RNAz p=0.822084 |
| Aligned organism(s): 85 entry(ies) | More info |
| Aligned organism(s): 85 entry(ies) | Help | Less info |
| 206-381, gnl|bosTau2|chr10 (12236703-12236878) | |
| 206-381, gnl|canFam2|chr20 (46436434-46436287) | |
| 206-381, gnl|canFam2|chr8 (7244174-7244308) | |
| 206-381, gnl|danRer3|chr25 (10405905-10406042) | |
| 206-381, gnl|danRer3|chr25 (10406088-10405906) | |
| 206-381, gnl|dasNov1|scaffold_61427 (10351-10485) | |
| 206-381, gnl|dasNov1|scaffold_8397 (77581-77764) | |
| 206-381, gnl|echTel1|scaffold_293929 (8123-8257) | |
| 206-381, gnl|echTel1|scaffold_293929 (8303-8123) | |
| 206-381, gnl|fr1|chrUn (154302007-154302143) | |
| 206-381, gnl|fr1|chrUn (36550302-36550119) | |
| 206-381, gnl|galGal2|chr2 (42255232-42255052) | |
| 206-381, gnl|galGal2|chr20 (9916045-9915909) | |
| 206-381, gnl|hg17|chr14 (23798119-23798253) | |
| 206-381, gnl|Hg17|chr14 (23798296-23798121) | |
| 206-381, gnl|hg17|chr3 (44918018-44918198) | |
| 206-381, gnl|loxAfr1|scaffold_47899 (11530-11705) | |
| 206-381, gnl|loxAfr1|scaffold_77810 (9208-9345) | |
| 206-381, gnl|mm7|chr14 (50576745-50576879) | |
| 206-381, gnl|Mm7|chr14 (50576922-50576747) | |
| 206-381, gnl|mm7|chr9 (122756482-122756659) | |
| 206-381, gnl|monDom2|scaffold_12 (25471746-25471612) | |
| 206-381, gnl|oryCun1|scaffold_178102 (142818-142952) | |
| 206-381, gnl|oryCun1|scaffold_183020 (93445-93626) | |
| 206-381, gnl|panTro1|chr15 (22700954-22701088) | |
| 206-381, gnl|panTro1|chr2 (46236606-46236786) | |
| 206-381, gnl|rheMac2|chr2 (91630300-91630120) | |
| 206-381, gnl|rheMac2|chr7 (87154360-87154494) | |
| 206-381, gnl|rn3|chr15 (33871275-33871409) | |
| 206-381, gnl|rn3|chr8 (127824572-127824752) | |
| 206-381, gnl|tetNig1|chr15 (1839471-1839289) | |
| 206-381, gnl|tetNig1|chr1_random (2263070-2263206) | |
| 206-381, gnl|xenTro1|scaffold_53 (635011-635145) | |
| 520-625, gnl|bosTau2|chr10 (12237559-12237664) | |
| 520-625, gnl|canFam2|chr8 (7243416-7243556) | |
| 520-625, gnl|canFam2|chr8 (7243533-7243413) | |
| 520-625, gnl|danRer3|chr25 (10405519-10405649) | |
| 520-625, gnl|danRer3|chr25 (10405620-10405513) | |
| 520-625, gnl|dasNov1|scaffold_30607 (6357-6499) | |
| 520-625, gnl|dasNov1|scaffold_30607 (6468-6354) | |
| 520-625, gnl|echTel1|scaffold_293929 (7257-7398) | |
| 520-625, gnl|echTel1|scaffold_293929 (7369-7258) | |
| 520-625, gnl|fr1|chrUn (154301619-154301760) | |
| 520-625, gnl|fr1|chrUn (36548740-36548633) | |
| 520-625, gnl|galGal2|chr2 (42254213-42254099) | |
| 520-625, gnl|galGal2|chr20 (9917156-9917024) | |
| 520-625, gnl|hg17|chr14 (23797326-23797467) | |
| 520-625, gnl|Hg17|chr14 (23797435-23797330) | |
| 520-625, gnl|hg17|chr3 (44920378-44920493) | |
| 520-625, gnl|loxAfr1|scaffold_61452 (7899-8041) | |
| 520-625, gnl|loxAfr1|scaffold_61452 (8011-7900) | |
| 520-625, gnl|mm7|chr14 (50576002-50576143) | |
| 520-625, gnl|Mm7|chr14 (50576111-50576006) | |
| 520-625, gnl|mm7|chr9 (122758069-122758186) | |
| 520-625, gnl|monDom2|scaffold_12 (25472463-25472319) | |
| 520-625, gnl|oryCun1|scaffold_176268 (5161-5260) | |
| 520-625, gnl|oryCun1|scaffold_178102 (141983-142124) | |
| 520-625, gnl|panTro1|chr15 (22700161-22700302) | |
| 520-625, gnl|panTro1|chr2 (46238964-46239079) | |
| 520-625, gnl|rheMac2|chr2 (91627959-91627844) | |
| 520-625, gnl|rheMac2|chr7 (87153572-87153713) | |
| 520-625, gnl|rn3|chr15 (33870533-33870674) | |
| 520-625, gnl|rn3|chr8 (127826033-127826150) | |
| 520-625, gnl|tetNig1|chr15 (1838666-1838559) | |
| 520-625, gnl|tetNig1|chr1_random (2262665-2262795) | |
| 520-625, gnl|xenTro1|scaffold_53 (633408-633532) | |
| 712-868, gnl|bosTau2|chr10 (12240922-12241078) | |
| 712-868, gnl|canFam2|chr8 (7241295-7241464) | |
| 712-868, gnl|danRer3|chr25 (10405181-10405339) | |
| 712-868, gnl|dasNov1|scaffold_61427 (6628-6797) | |
| 712-868, gnl|echTel1|scaffold_293929 (3215-3384) | |
| 712-868, gnl|fr1|chrUn (154300679-154300848) | |
| 712-868, gnl|galGal2|chr20 (9917500-9917356) | |
| 712-868, gnl|hg17|chr14 (23794400-23794569) | |
| 712-868, gnl|Hg17|chr14 (23794565-23794409) | |
| 712-868, gnl|loxAfr1|scaffold_61452 (4232-4401) | |
| 712-868, gnl|mm7|chr14 (50573184-50573353) | |
| 712-868, gnl|Mm7|chr14 (50573349-50573193) | |
| 712-868, gnl|monDom2|scaffold_12 (25479590-25479423) | |
| 712-868, gnl|oryCun1|scaffold_178102 (137333-137497) | |
| 712-868, gnl|panTro1|chr15 (22697253-22697422) | |
| 712-868, gnl|rheMac2|chr7 (87150535-87150704) | |
| 712-868, gnl|rn3|chr15 (33867620-33867789) | |
| 712-868, gnl|tetNig1|chr1_random (2261221-2261390) | |
| 712-868, gnl|xenTro1|scaffold_53 (632879-633040) |
| Aligned organism(s): 85 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 206-381, gnl|bosTau2|chr10 (12236703-12236878) | |
| 206-381, gnl|canFam2|chr20 (46436434-46436287) | |
| 206-381, gnl|canFam2|chr8 (7244174-7244308) | |
| 206-381, gnl|danRer3|chr25 (10405905-10406042) | |
| 206-381, gnl|danRer3|chr25 (10406088-10405906) | |
| 206-381, gnl|dasNov1|scaffold_61427 (10351-10485) | |
| 206-381, gnl|dasNov1|scaffold_8397 (77581-77764) | |
| 206-381, gnl|echTel1|scaffold_293929 (8123-8257) | |
| 206-381, gnl|echTel1|scaffold_293929 (8303-8123) | |
| 206-381, gnl|fr1|chrUn (154302007-154302143) | |
| 206-381, gnl|fr1|chrUn (36550302-36550119) | |
| 206-381, gnl|galGal2|chr2 (42255232-42255052) | |
| 206-381, gnl|galGal2|chr20 (9916045-9915909) | |
| 206-381, gnl|hg17|chr14 (23798119-23798253) | |
| 206-381, gnl|Hg17|chr14 (23798296-23798121) | |
| 206-381, gnl|hg17|chr3 (44918018-44918198) | |
| 206-381, gnl|loxAfr1|scaffold_47899 (11530-11705) | |
| 206-381, gnl|loxAfr1|scaffold_77810 (9208-9345) | |
| 206-381, gnl|mm7|chr14 (50576745-50576879) | |
| 206-381, gnl|Mm7|chr14 (50576922-50576747) | |
| 206-381, gnl|mm7|chr9 (122756482-122756659) | |
| 206-381, gnl|monDom2|scaffold_12 (25471746-25471612) | |
| 206-381, gnl|oryCun1|scaffold_178102 (142818-142952) | |
| 206-381, gnl|oryCun1|scaffold_183020 (93445-93626) | |
| 206-381, gnl|panTro1|chr15 (22700954-22701088) | |
| 206-381, gnl|panTro1|chr2 (46236606-46236786) | |
| 206-381, gnl|rheMac2|chr2 (91630300-91630120) | |
| 206-381, gnl|rheMac2|chr7 (87154360-87154494) | |
| 206-381, gnl|rn3|chr15 (33871275-33871409) | |
| 206-381, gnl|rn3|chr8 (127824572-127824752) | |
| 206-381, gnl|tetNig1|chr15 (1839471-1839289) | |
| 206-381, gnl|tetNig1|chr1_random (2263070-2263206) | |
| 206-381, gnl|xenTro1|scaffold_53 (635011-635145) | |
| 520-625, gnl|bosTau2|chr10 (12237559-12237664) | |
| 520-625, gnl|canFam2|chr8 (7243416-7243556) | |
| 520-625, gnl|canFam2|chr8 (7243533-7243413) | |
| 520-625, gnl|danRer3|chr25 (10405519-10405649) | |
| 520-625, gnl|danRer3|chr25 (10405620-10405513) | |
| 520-625, gnl|dasNov1|scaffold_30607 (6357-6499) | |
| 520-625, gnl|dasNov1|scaffold_30607 (6468-6354) | |
| 520-625, gnl|echTel1|scaffold_293929 (7257-7398) | |
| 520-625, gnl|echTel1|scaffold_293929 (7369-7258) | |
| 520-625, gnl|fr1|chrUn (154301619-154301760) | |
| 520-625, gnl|fr1|chrUn (36548740-36548633) | |
| 520-625, gnl|galGal2|chr2 (42254213-42254099) | |
| 520-625, gnl|galGal2|chr20 (9917156-9917024) | |
| 520-625, gnl|hg17|chr14 (23797326-23797467) | |
| 520-625, gnl|Hg17|chr14 (23797435-23797330) | |
| 520-625, gnl|hg17|chr3 (44920378-44920493) | |
| 520-625, gnl|loxAfr1|scaffold_61452 (7899-8041) | |
| 520-625, gnl|loxAfr1|scaffold_61452 (8011-7900) | |
| 520-625, gnl|mm7|chr14 (50576002-50576143) | |
| 520-625, gnl|Mm7|chr14 (50576111-50576006) | |
| 520-625, gnl|mm7|chr9 (122758069-122758186) | |
| 520-625, gnl|monDom2|scaffold_12 (25472463-25472319) | |
| 520-625, gnl|oryCun1|scaffold_176268 (5161-5260) | |
| 520-625, gnl|oryCun1|scaffold_178102 (141983-142124) | |
| 520-625, gnl|panTro1|chr15 (22700161-22700302) | |
| 520-625, gnl|panTro1|chr2 (46238964-46239079) | |
| 520-625, gnl|rheMac2|chr2 (91627959-91627844) | |
| 520-625, gnl|rheMac2|chr7 (87153572-87153713) | |
| 520-625, gnl|rn3|chr15 (33870533-33870674) | |
| 520-625, gnl|rn3|chr8 (127826033-127826150) | |
| 520-625, gnl|tetNig1|chr15 (1838666-1838559) | |
| 520-625, gnl|tetNig1|chr1_random (2262665-2262795) | |
| 520-625, gnl|xenTro1|scaffold_53 (633408-633532) | |
| 712-868, gnl|bosTau2|chr10 (12240922-12241078) | |
| 712-868, gnl|canFam2|chr8 (7241295-7241464) | |
| 712-868, gnl|danRer3|chr25 (10405181-10405339) | |
| 712-868, gnl|dasNov1|scaffold_61427 (6628-6797) | |
| 712-868, gnl|echTel1|scaffold_293929 (3215-3384) | |
| 712-868, gnl|fr1|chrUn (154300679-154300848) | |
| 712-868, gnl|galGal2|chr20 (9917500-9917356) | |
| 712-868, gnl|hg17|chr14 (23794400-23794569) | |
| 712-868, gnl|Hg17|chr14 (23794565-23794409) | |
| 712-868, gnl|loxAfr1|scaffold_61452 (4232-4401) | |
| 712-868, gnl|mm7|chr14 (50573184-50573353) | |
| 712-868, gnl|Mm7|chr14 (50573349-50573193) | |
| 712-868, gnl|monDom2|scaffold_12 (25479590-25479423) | |
| 712-868, gnl|oryCun1|scaffold_178102 (137333-137497) | |
| 712-868, gnl|panTro1|chr15 (22697253-22697422) | |
| 712-868, gnl|rheMac2|chr7 (87150535-87150704) | |
| 712-868, gnl|rn3|chr15 (33867620-33867789) | |
| 712-868, gnl|tetNig1|chr1_random (2261221-2261390) | |
| 712-868, gnl|xenTro1|scaffold_53 (632879-633040) |