Non-Coding RNA Search

Ss1.1-Pig1-116G05.5

Sequence:


               
               GTGCCATCTTCAGGCAGACTAAATGGTGATCAGAATCCCCTGCCCAGCCTCTGAGCTGGA
CCTCCTAGGGTCCCTGGAAACCCCTCCCCTGCTCTAGTAGTTCCTTAGTCATTCCCTGGG
GGCGAGGCTGTCAGGAGACTGGTGGTTTTCCAGAGGCAGTAGGAGTGGGGGCCCAGGCAG
TGCAGGGCTGGGGAGCTCTAAGGAGAGAGCAGGGGGCTGGTGGGTTGGCTGGCATATAGT
TTTGTCAGGGAGTGGCCCACGCTCCTCATCCCCAGCCCGCCTGGTGGGCCGGGCATGGGA
GGCAGGATGGCCAGAAGCCCAGGGCCGGGTCCACGCTGCCTTCCTTCTCCCCTCCTTTGC
CCAGGGTCCTGCATCCTCGAGCCCCCTATGTGGCCGCCCTGCACCCCTGCCTGCCCACTG
GATGCCATGCACTGCCCCTGTGCCCTGTTTCCCTGCTTGGCACTGCCAGCCACTCGCTCT
GCTTACAGTGCCCCACAGCCCCTGCACCACTGCTGGCTGAGACCTTCCTCTGGCAATGCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTGCCATCTTCAGGCAGACTAAATGGTGATCAGAATCCCCTGCCCAGCCTCTGAGCTGGA
CCTCCTAGGGTCCCTGGAAACCCCTCCCCTGCTCTAGTAGTTCCTTAGTCATTCCCTGGG
GGCGAGGCTGTCAGGAGACTGGTGGTTTTCCAGAGGCAGTAGGAGTGGGGGCCCAGGCAG
TGCAGGGCTGGGGAGCTCTAAGGAGAGAGCAGGGGGCTGGTGGGTTGGCTGGCATATAGT
TTTGTCAGGGAGTGGCCCACGCTCCTCATCCCCAGCCCGCCTGGTGGGCCGGGCATGGGA
GGCAGGATGGCCAGAAGCCCAGGGCCGGGTCCACGCTGCCTTCCTTCTCCCCTCCTTTGC
CCAGGGTCCTGCATCCTCGAGCCCCCTATGTGGCCGCCCTGCACCCCTGCCTGCCCACTG
GATGCCATGCACTGCCCCTGTGCCCTGTTTCCCTGCTTGGCACTGCCAGCCACTCGCTCT
GCTTACAGTGCCCCACAGCCCCTGCACCACTGCTGGCTGAGACCTTCCTCTGGCAATGCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               43-160, + strand, RNAz p=0.935955

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               43-160, + strand, RNAz p=0.935955

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               5-540, gnl|bosTau2|chr8 (31356737-31356233)
               

               
               5-540, gnl|Hg17|chr8 (22111803-22112331)
               

               
               5-540, gnl|Mm7|chr14 (65134001-65133470)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               5-540, gnl|bosTau2|chr8 (31356737-31356233)
               

               
               5-540, gnl|Hg17|chr8 (22111803-22112331)
               

               
               5-540, gnl|Mm7|chr14 (65134001-65133470)

	5-540, gnl\|bosTau2\|chr8 (31356737-31356233)
	5-540, gnl\|Hg17\|chr8 (22111803-22112331)
	5-540, gnl\|Mm7\|chr14 (65134001-65133470)