Ss1.1-Pig1-116I18.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AAGCACTGGGCAAAACANAGCAGCTGCGGGCGCCTACCTGCCCCCCCTGCAGCAGGTGTT CCAGGCACCTCGCCGGCCTGGTATTGGCACTGTGGGGAAACCAATCAAGCTCCTGGCCAA TTACTTTGAAGTGGACATCCCTAAGATTGACGTCTACCACTACGAGGTGGATATCAAGCC GGATAAGTGTCCTCGCAGAGTCAACCGGGAAGTGGTGGAATACATGGTCCAGCATTTCAA GCCTCAGATCTTTGGTGATCGCAAGCCCGTATATGATGGAAAGAAGAATATTTACACTGT CACAGCGCTGCCCATTGGCAATGAACGGGTTGACTTTGAGGTGACAATCCCTGGGGAAGG GAAGGATCGAATCTTCAAGGTCTCCATCAAGTGGCTAGCCATTGTGAGCTGGCGCATGCT GCATGAGGCCTTGGTCAGTGGCCAGATCCCTGTTCCCCTGGAGTCTGTGCAAGCCCTGGA TGTGGCCATGAGGCACCTGGCATCCATGAGGTACACCCCTGTGGGCCGCTCCTTCTTCTC ACCGCCTGAGGGCTACTACCACCCGCTGGGGGGTGGGCGCGAGGTCTGGTTCGGCTTTCA CCAGTCTGTGCGCCCTGCCATGTGGAAGATGATGCTCAACATTGATGTCTCAGCCACTGC CTTCTACAAGGCGCAGCCAGTGATTGAGTTCATGTGTGAGGTGCTGGACATCAGGAACAT AGATGAGCAGCCCAAGCCCCTCACGGACTCTCAGCGTGTACGCTTCACCAAGGAGATCAA GGGCCTGAAGGTGGAAGTGACCCACTGTGGACAGATGAAGAGGAAATACCGTGTGTGTAA TGTTACCCGCCG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AAGCACTGGGCAAAACANAGCAGCTGCGGGCGCCTACCTGCCCCCCCTGCAGCAGGTGTT CCAGGCACCTCGCCGGCCTGGTATTGGCACTGTGGGGAAACCAATCAAGCTCCTGGCCAA TTACTTTGAAGTGGACATCCCTAAGATTGACGTCTACCACTACGAGGTGGATATCAAGCC GGATAAGTGTCCTCGCAGAGTCAACCGGGAAGTGGTGGAATACATGGTCCAGCATTTCAA GCCTCAGATCTTTGGTGATCGCAAGCCCGTATATGATGGAAAGAAGAATATTTACACTGT CACAGCGCTGCCCATTGGCAATGAACGGGTTGACTTTGAGGTGACAATCCCTGGGGAAGG GAAGGATCGAATCTTCAAGGTCTCCATCAAGTGGCTAGCCATTGTGAGCTGGCGCATGCT GCATGAGGCCTTGGTCAGTGGCCAGATCCCTGTTCCCCTGGAGTCTGTGCAAGCCCTGGA TGTGGCCATGAGGCACCTGGCATCCATGAGGTACACCCCTGTGGGCCGCTCCTTCTTCTC ACCGCCTGAGGGCTACTACCACCCGCTGGGGGGTGGGCGCGAGGTCTGGTTCGGCTTTCA CCAGTCTGTGCGCCCTGCCATGTGGAAGATGATGCTCAACATTGATGTCTCAGCCACTGC CTTCTACAAGGCGCAGCCAGTGATTGAGTTCATGTGTGAGGTGCTGGACATCAGGAACAT AGATGAGCAGCCCAAGCCCCTCACGGACTCTCAGCGTGTACGCTTCACCAAGGAGATCAA GGGCCTGAAGGTGGAAGTGACCCACTGTGGACAGATGAAGAGGAAATACCGTGTGTGTAA TGTTACCCGCCG |
| Coded protein: 1 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | More info |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
| 22-140, - strand, RNAz p=0.59106 | |
| 328-446, + strand, RNAz p=0.953147 |
| Predicted RNA structure(s): 2 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 22-140, - strand, RNAz p=0.59106 | |
| 328-446, + strand, RNAz p=0.953147 |
| Aligned organism(s): 41 entry(ies) | More info |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
| 22-217, gnl|bosTau2|chr3 (76984112-76983917) | |
| 22-217, gnl|Hg17|chr1 (36023119-36023314) | |
| 22-217, gnl|Mm7|chr4 (125908504-125908309) | |
| 328-514, gnl|bosTau2|chr3 (76981028-76980842) | |
| 328-514, gnl|canFam2|chr15 (9296058-9295872) | |
| 328-514, gnl|danRer3|chr16 (52323975-52323789) | |
| 328-514, gnl|dasNov1|scaffold_4840 (41976-41790) | |
| 328-514, gnl|echTel1|scaffold_105310 (2128-1942) | |
| 328-514, gnl|fr1|chrUn (110386740-110386554) | |
| 328-514, gnl|galGal2|chr23 (3718526-3718340) | |
| 328-514, gnl|hg17|chr1 (36027790-36027976) | |
| 328-514, gnl|Hg17|chr1 (36027790-36027976) | |
| 328-514, gnl|loxAfr1|scaffold_55861 (7131-7317) | |
| 328-514, gnl|mm7|chr4 (125905737-125905551) | |
| 328-514, gnl|Mm7|chr4 (125905735-125905549) | |
| 328-514, gnl|monDom2|scaffold_43 (14354198-14354012) | |
| 328-514, gnl|oryCun1|scaffold_138245 (58-243) | |
| 328-514, gnl|panTro1|chr1 (36857395-36857581) | |
| 328-514, gnl|rheMac2|chr1 (38734142-38734328) | |
| 328-514, gnl|rn3|chr5 (145832577-145832391) | |
| 328-514, gnl|tetNig1|chrUn_random (22554760-22554574) | |
| 328-514, gnl|xenTro1|scaffold_163 (100179-100365) | |
| 647-783, gnl|bosTau2|chr3 (76980086-76979950) | |
| 647-783, gnl|canFam2|chr15 (9295129-9294955) | |
| 647-783, gnl|danRer3|chr16 (52319939-52319791) | |
| 647-783, gnl|dasNov1|scaffold_4840 (41060-40886) | |
| 647-783, gnl|echTel1|scaffold_105310 (1209-1039) | |
| 647-783, gnl|fr1|chrUn (110384814-110384629) | |
| 647-783, gnl|galGal2|chr23 (3717818-3717663) | |
| 647-783, gnl|hg17|chr1 (36028720-36028894) | |
| 647-783, gnl|Hg17|chr1 (36028730-36028866) | |
| 647-783, gnl|loxAfr1|scaffold_55861 (8045-8215) | |
| 647-783, gnl|mm7|chr4 (125904795-125904621) | |
| 647-783, gnl|Mm7|chr4 (125904783-125904647) | |
| 647-783, gnl|monDom2|scaffold_43 (14352752-14352572) | |
| 647-783, gnl|oryCun1|scaffold_138245 (987-1160) | |
| 647-783, gnl|panTro1|chr1 (36858323-36858497) | |
| 647-783, gnl|rheMac2|chr1 (38735076-38735250) | |
| 647-783, gnl|rn3|chr5 (145831658-145831481) | |
| 647-783, gnl|tetNig1|chrUn_random (22553322-22553148) | |
| 647-783, gnl|xenTro1|scaffold_163 (103770-103914) |
| Aligned organism(s): 41 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 22-217, gnl|bosTau2|chr3 (76984112-76983917) | |
| 22-217, gnl|Hg17|chr1 (36023119-36023314) | |
| 22-217, gnl|Mm7|chr4 (125908504-125908309) | |
| 328-514, gnl|bosTau2|chr3 (76981028-76980842) | |
| 328-514, gnl|canFam2|chr15 (9296058-9295872) | |
| 328-514, gnl|danRer3|chr16 (52323975-52323789) | |
| 328-514, gnl|dasNov1|scaffold_4840 (41976-41790) | |
| 328-514, gnl|echTel1|scaffold_105310 (2128-1942) | |
| 328-514, gnl|fr1|chrUn (110386740-110386554) | |
| 328-514, gnl|galGal2|chr23 (3718526-3718340) | |
| 328-514, gnl|hg17|chr1 (36027790-36027976) | |
| 328-514, gnl|Hg17|chr1 (36027790-36027976) | |
| 328-514, gnl|loxAfr1|scaffold_55861 (7131-7317) | |
| 328-514, gnl|mm7|chr4 (125905737-125905551) | |
| 328-514, gnl|Mm7|chr4 (125905735-125905549) | |
| 328-514, gnl|monDom2|scaffold_43 (14354198-14354012) | |
| 328-514, gnl|oryCun1|scaffold_138245 (58-243) | |
| 328-514, gnl|panTro1|chr1 (36857395-36857581) | |
| 328-514, gnl|rheMac2|chr1 (38734142-38734328) | |
| 328-514, gnl|rn3|chr5 (145832577-145832391) | |
| 328-514, gnl|tetNig1|chrUn_random (22554760-22554574) | |
| 328-514, gnl|xenTro1|scaffold_163 (100179-100365) | |
| 647-783, gnl|bosTau2|chr3 (76980086-76979950) | |
| 647-783, gnl|canFam2|chr15 (9295129-9294955) | |
| 647-783, gnl|danRer3|chr16 (52319939-52319791) | |
| 647-783, gnl|dasNov1|scaffold_4840 (41060-40886) | |
| 647-783, gnl|echTel1|scaffold_105310 (1209-1039) | |
| 647-783, gnl|fr1|chrUn (110384814-110384629) | |
| 647-783, gnl|galGal2|chr23 (3717818-3717663) | |
| 647-783, gnl|hg17|chr1 (36028720-36028894) | |
| 647-783, gnl|Hg17|chr1 (36028730-36028866) | |
| 647-783, gnl|loxAfr1|scaffold_55861 (8045-8215) | |
| 647-783, gnl|mm7|chr4 (125904795-125904621) | |
| 647-783, gnl|Mm7|chr4 (125904783-125904647) | |
| 647-783, gnl|monDom2|scaffold_43 (14352752-14352572) | |
| 647-783, gnl|oryCun1|scaffold_138245 (987-1160) | |
| 647-783, gnl|panTro1|chr1 (36858323-36858497) | |
| 647-783, gnl|rheMac2|chr1 (38735076-38735250) | |
| 647-783, gnl|rn3|chr5 (145831658-145831481) | |
| 647-783, gnl|tetNig1|chrUn_random (22553322-22553148) | |
| 647-783, gnl|xenTro1|scaffold_163 (103770-103914) |