Non-Coding RNA Search

Ss1.1-Pig1-116I21.5

Sequence:


               
               GCCTGCCGAGGCGACCATCCTCTCAGTGCTGCCTGATGGTGAGGAGGTGCCCGCGTGTCT
GAGTGAGAGCAGTAAGCTGGAGCTCCCGCCCTCAGCAGCATCTGACGAGCTACTTCAGGA
GTCATTGGAGGCTGACAAGAACTCAGAAGAGCTCGTGGAGGCCCAGACCCCAACCTCTAC
CCCAGAGAAACCACAGGAACTTGTTTCAGCTGAAGTTGCAGCCCCATCAACCTCATCCTC
GGCCACCTCCACCCCTGAGGGTCCTTCACCTGCCCGGCCCCCTCGGCGTCGCACCAGTGC
TGATGTAGAAATTAGGGGTCAGGGGGCTGGTCGGCCAGGGCAGCCTCCAGGTCCCAAAGT
GCTTCGCAAGCTGCCAGGACGGCTAGTGACTGTGGTAGAGGAAAAGGAACTAGTGAGGCG
GCGACGACAGCAGCGGGGAACTGCCAGTACCCTAGTGCCTGGGGTCTCTGAGACTGGTGC
CAGCCCTGGAAGCCCATCTACCCGCAGCGTGTCAGGGCCAGAATCCTCACCTCCCACCAG
TGGTCCCTGTGAAGCTGCTCCCCCATCCACACTGCCCACCCCAACCCAGCAGCCTTTCAT
AGCTCGCCGTCGCATTGAGCTGGGGGTGACTGGTGGGGGCAGCCCAGAAAATGGAGAAGG
GGCACTACTCGCCATCACTCCTCCTGCTGTGAAACGTCGGAGGGGGAGGCCCCCCAAGAA
GAACAGGTCTCCAGCAGATGCTGGGCGAGGGGTGGATGAGGCACCTTCATCCACCTCTAA
GGGAAAAACGAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GCCTGCCGAGGCGACCATCCTCTCAGTGCTGCCTGATGGTGAGGAGGTGCCCGCGTGTCT
GAGTGAGAGCAGTAAGCTGGAGCTCCCGCCCTCAGCAGCATCTGACGAGCTACTTCAGGA
GTCATTGGAGGCTGACAAGAACTCAGAAGAGCTCGTGGAGGCCCAGACCCCAACCTCTAC
CCCAGAGAAACCACAGGAACTTGTTTCAGCTGAAGTTGCAGCCCCATCAACCTCATCCTC
GGCCACCTCCACCCCTGAGGGTCCTTCACCTGCCCGGCCCCCTCGGCGTCGCACCAGTGC
TGATGTAGAAATTAGGGGTCAGGGGGCTGGTCGGCCAGGGCAGCCTCCAGGTCCCAAAGT
GCTTCGCAAGCTGCCAGGACGGCTAGTGACTGTGGTAGAGGAAAAGGAACTAGTGAGGCG
GCGACGACAGCAGCGGGGAACTGCCAGTACCCTAGTGCCTGGGGTCTCTGAGACTGGTGC
CAGCCCTGGAAGCCCATCTACCCGCAGCGTGTCAGGGCCAGAATCCTCACCTCCCACCAG
TGGTCCCTGTGAAGCTGCTCCCCCATCCACACTGCCCACCCCAACCCAGCAGCCTTTCAT
AGCTCGCCGTCGCATTGAGCTGGGGGTGACTGGTGGGGGCAGCCCAGAAAATGGAGAAGG
GGCACTACTCGCCATCACTCCTCCTGCTGTGAAACGTCGGAGGGGGAGGCCCCCCAAGAA
GAACAGGTCTCCAGCAGATGCTGGGCGAGGGGTGGATGAGGCACCTTCATCCACCTCTAA
GGGAAAAACGAA

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-159, - strand, RNAz p=0.947615
               

               
               520-792, - strand, RNAz p=0.999983

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-159, - strand, RNAz p=0.947615
               

               
               520-792, - strand, RNAz p=0.999983

Similar Transcript(s): 6 entry(ies)

More info

Similar Transcript(s): 6 entry(ies)

Help | Less info


               
               520-789, 528251 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM287509.1|), 
blast E-value=0, identity=94.81% 
               

               
               521-789, LeukoN2_4_D10.g1_A024 Unstimulated peripheral blood leukocytes N2 
(gb|CD466523.1|), blast E-value=0, identity=94.42% 
               

               
               546-789, 4125698 BARC 8BOV Bos taurus cDNA clone 8BOV_38J02 5', mRNA 
(gb|CN791030.1|), blast E-value=0, identity=94.67% 
               

               
               520-789, LIB30320_020_H07_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN267154.1|), blast E-value=0, identity=95.19% 
               

               
               520-789, LB02512.CR_G03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV870782.1|), 
blast E-value=0, identity=94.81% 
               

               
               520-789, LB02948.CR_H21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE354093.1|), 
blast E-value=0, identity=94.81%

Similar Transcript(s): 6 entry(ies)

Help | Less info

PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               520-789, 528251 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb|BM287509.1|), 
blast E-value=0, identity=94.81% 
               

               
               521-789, LeukoN2_4_D10.g1_A024 Unstimulated peripheral blood leukocytes N2 
(gb|CD466523.1|), blast E-value=0, identity=94.42% 
               

               
               546-789, 4125698 BARC 8BOV Bos taurus cDNA clone 8BOV_38J02 5', mRNA 
(gb|CN791030.1|), blast E-value=0, identity=94.67% 
               

               
               520-789, LIB30320_020_H07_SP6_1 LIB30320 Canis familiaris cDNA clone 
(gb|DN267154.1|), blast E-value=0, identity=95.19% 
               

               
               520-789, LB02512.CR_G03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb|DV870782.1|), 
blast E-value=0, identity=94.81% 
               

               
               520-789, LB02948.CR_H21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb|EE354093.1|), 
blast E-value=0, identity=94.81%

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               1-792, gnl|bosTau2|chr25 (25698605-25697811)
               

               
               1-792, gnl|Hg17|chr16 (30656740-30657531)
               

               
               1-792, gnl|Mm7|chr7 (123655527-123656315)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-792, gnl|bosTau2|chr25 (25698605-25697811)
               

               
               1-792, gnl|Hg17|chr16 (30656740-30657531)
               

               
               1-792, gnl|Mm7|chr7 (123655527-123656315)

	1-159, - strand, RNAz p=0.947615
	520-792, - strand, RNAz p=0.999983

	520-789, 528251 MARC 3BOV Bos taurus cDNA 5', mRNA sequence (gb\|BM287509.1\|), blast E-value=0, identity=94.81%
	521-789, LeukoN2_4_D10.g1_A024 Unstimulated peripheral blood leukocytes N2 (gb\|CD466523.1\|), blast E-value=0, identity=94.42%
	546-789, 4125698 BARC 8BOV Bos taurus cDNA clone 8BOV_38J02 5', mRNA (gb\|CN791030.1\|), blast E-value=0, identity=94.67%
	520-789, LIB30320_020_H07_SP6_1 LIB30320 Canis familiaris cDNA clone (gb\|DN267154.1\|), blast E-value=0, identity=95.19%
	520-789, LB02512.CR_G03 GC_BGC-25 Bos taurus cDNA clone IMAGE (gb\|DV870782.1\|), blast E-value=0, identity=94.81%
	520-789, LB02948.CR_H21 GC_BGC-29 Bos taurus cDNA clone IMAGE (gb\|EE354093.1\|), blast E-value=0, identity=94.81%

	1-792, gnl\|bosTau2\|chr25 (25698605-25697811)
	1-792, gnl\|Hg17\|chr16 (30656740-30657531)
	1-792, gnl\|Mm7\|chr7 (123655527-123656315)