Ss1.1-Pig1-116N02.5
|
GAGCCAACAGGCTGTGGTGAGGCGGGGCCCCTCTTACTCTGACCCCTTCCCAGGCTCCCC
CTTTCCCAGCCCTGGCCCACCAAGCCTGGACCCAGCTTCCCTCATCCCCACTTCCGGATC
CTGCGGCCTCCTGAGCCTGCTTCCTGCCCGGTCTGAGCAGGGTCATGGCCTTGAGGGCAG
GTGGCCACAGCCAGGCTGCCATGAACGGGCTGAAGGAGAAGGTGCTAACGCTGGACTCCA
TGAACCCCTGCGTTCAGAGGGTGGAGTACGCGGTGCGCGGCCCCATCGTGCTACGCGCCC
TGGAGCTGGAGCAGGAGCTGCGCCAGGGGGTAAAGAAGCCCTTCACTGAGGTCATCCGAG
CCAACATCGGGGATGCCCAGGCCATGGGGCAGAAGCCTATCACCTTCCTGCGGCAGGTCC
TGGCCCTCTGCATCCACCCTGATCTCCTGAACAGTGCTGACTTCCCGGAGGATGCCAAGA
GAAGAGCACAGCGCATCCTGCAGGCGTGCGGGGGCCACAGCCTGGGGGCCTACAGCATCA
GCCCTGGCATCC
|
Blue-coloured subsequences are predicted RNA structures by RNAz
|
GAGCCAACAGGCTGTGGTGAGGCGGGGCCCCTCTTACTCTGACCCCTTCCCAGGCTCCCC
CTTTCCCAGCCCTGGCCCACCAAGCCTGGACCCAGCTTCCCTCATCCCCACTTCCGGATC
CTGCGGCCTCCTGAGCCTGCTTCCTGCCCGGTCTGAGCAGGGTCATGGCCTTGAGGGCAG
GTGGCCACAGCCAGGCTGCCATGAACGGGCTGAAGGAGAAGGTGCTAACGCTGGACTCCA
TGAACCCCTGCGTTCAGAGGGTGGAGTACGCGGTGCGCGGCCCCATCGTGCTACGCGCCC
TGGAGCTGGAGCAGGAGCTGCGCCAGGGGGTAAAGAAGCCCTTCACTGAGGTCATCCGAG
CCAACATCGGGGATGCCCAGGCCATGGGGCAGAAGCCTATCACCTTCCTGCGGCAGGTCC
TGGCCCTCTGCATCCACCCTGATCTCCTGAACAGTGCTGACTTCCCGGAGGATGCCAAGA
GAAGAGCACAGCGCATCCTGCAGGCGTGCGGGGGCCACAGCCTGGGGGCCTACAGCATCA
GCCCTGGCATCC
|
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
|
123-251, - strand, RNAmicro p=0.982747 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
123-251, - strand, RNAmicro p=0.982747 |
|
43-327, gnl|bosTau2|chr14 (3260648-3260367) |
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43-327, gnl|Hg17|chr8 (145700359-145700658) |
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43-327, gnl|Mm7|chr15 (76779324-76779572) |
| |
|
414-544, gnl|bosTau2|chr14 (3259966-3259835) |
|
414-544, gnl|canFam2|chr13 (40955170-40955287) |
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414-544, gnl|danRer3|chr7 (35554310-35554193) |
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414-544, gnl|dasNov1|scaffold_19387 (13756-13873) |
|
414-544, gnl|echTel1|scaffold_297519 (2964-2847) |
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414-544, gnl|fr1|chrUn (283519457-283519574) |
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414-544, gnl|hg17|chr8 (145700960-145701077) |
|
414-544, gnl|Hg17|chr8 (145700959-145701085) |
|
414-544, gnl|loxAfr1|scaffold_88657 (4530-4413) |
|
414-544, gnl|mm7|chr15 (76779872-76779989) |
|
414-544, gnl|Mm7|chr15 (76779871-76780008) |
|
414-544, gnl|monDom2|scaffold_79 (3570681-3570797) |
|
414-544, gnl|oryCun1|scaffold_199595 (224-107) |
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414-544, gnl|panTro1|chr7 (148957131-148957248) |
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414-544, gnl|rheMac2|chr8 (147169999-147170116) |
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414-544, gnl|rn3|chr7 (114780850-114780967) |
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414-544, gnl|tetNig1|chr6 (1278426-1278309) |
|
414-544, gnl|xenTro1|scaffold_1265 (171891-171770) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
43-327, gnl|bosTau2|chr14 (3260648-3260367) |
|
43-327, gnl|Hg17|chr8 (145700359-145700658) |
|
43-327, gnl|Mm7|chr15 (76779324-76779572) |
| |
|
414-544, gnl|bosTau2|chr14 (3259966-3259835) |
|
414-544, gnl|canFam2|chr13 (40955170-40955287) |
|
414-544, gnl|danRer3|chr7 (35554310-35554193) |
|
414-544, gnl|dasNov1|scaffold_19387 (13756-13873) |
|
414-544, gnl|echTel1|scaffold_297519 (2964-2847) |
|
414-544, gnl|fr1|chrUn (283519457-283519574) |
|
414-544, gnl|hg17|chr8 (145700960-145701077) |
|
414-544, gnl|Hg17|chr8 (145700959-145701085) |
|
414-544, gnl|loxAfr1|scaffold_88657 (4530-4413) |
|
414-544, gnl|mm7|chr15 (76779872-76779989) |
|
414-544, gnl|Mm7|chr15 (76779871-76780008) |
|
414-544, gnl|monDom2|scaffold_79 (3570681-3570797) |
|
414-544, gnl|oryCun1|scaffold_199595 (224-107) |
|
414-544, gnl|panTro1|chr7 (148957131-148957248) |
|
414-544, gnl|rheMac2|chr8 (147169999-147170116) |
|
414-544, gnl|rn3|chr7 (114780850-114780967) |
|
414-544, gnl|tetNig1|chr6 (1278426-1278309) |
|
414-544, gnl|xenTro1|scaffold_1265 (171891-171770) |
