Non-Coding RNA Search

Ss1.1-Pig1-117E20.5

Sequence:


               
               ATTTATTTGTCATAAGCAAATAAAATGCGGGTAAGCTGTCTCCTTCTAGACAGACGGCTC
TTTGCTTATTAAAGTTCCGAGAGAGGATTCTGCGCGGCCGGCCTCTTTCCTCCGCGTAAG
AAGGTATCGTTTTCCTCTGAGGTGTTTAAGGCTTTAATGAGTCTAATTTTTTGCACAGAT
GTTTCTGGGTGTTTGCAGGTTTTCAGAGTATTTTTATATTACAAAGGAGCTAGCCGGTGC
CATAGCTCAAACTCTGACAAGCAAATAGATAATCAAGAAGACAAATGGCCTCTTTTGTGA
AGCCCTGCTCCTGTATTAATTTTCATTTTCTTTCTCATAGAAAGTATCGAAAGTACGACT
GGGGACCAAATAGCTTTCTGTCTCTTGAGGTCCCAGTCACCCCTANAATGGAGCGGGGGT
TGGAGGAGGGGTGCANGTGACCCTTATTAGAAGCTCTGTCAGGCTTGGGCCACTTTGGGG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               ATTTATTTGTCATAAGCAAATAAAATGCGGGTAAGCTGTCTCCTTCTAGACAGACGGCTC
TTTGCTTATTAAAGTTCCGAGAGAGGATTCTGCGCGGCCGGCCTCTTTCCTCCGCGTAAG
AAGGTATCGTTTTCCTCTGAGGTGTTTAAGGCTTTAATGAGTCTAATTTTTTGCACAGAT
GTTTCTGGGTGTTTGCAGGTTTTCAGAGTATTTTTATATTACAAAGGAGCTAGCCGGTGC
CATAGCTCAAACTCTGACAAGCAAATAGATAATCAAGAAGACAAATGGCCTCTTTTGTGA
AGCCCTGCTCCTGTATTAATTTTCATTTTCTTTCTCATAGAAAGTATCGAAAGTACGACT
GGGGACCAAATAGCTTTCTGTCTCTTGAGGTCCCAGTCACCCCTANAATGGAGCGGGGGT
TGGAGGAGGGGTGCANGTGACCCTTATTAGAAGCTCTGTCAGGCTTGGGCCACTTTGGGG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               1-118, - strand, RNAz p=0.756536
               

               
               196-479, + strand, RNAz p=0.974986

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               1-118, - strand, RNAz p=0.756536
               

               
               196-479, + strand, RNAz p=0.974986

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               1-479, gnl|bosTau2|chr19 (31194087-31193610)
               

               
               1-479, gnl|Hg17|chr17 (44007528-44007051)
               

               
               1-479, gnl|Mm7|chr11 (96431101-96431576)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-479, gnl|bosTau2|chr19 (31194087-31193610)
               

               
               1-479, gnl|Hg17|chr17 (44007528-44007051)
               

               
               1-479, gnl|Mm7|chr11 (96431101-96431576)

	1-118, - strand, RNAz p=0.756536
	196-479, + strand, RNAz p=0.974986

	1-479, gnl\|bosTau2\|chr19 (31194087-31193610)
	1-479, gnl\|Hg17\|chr17 (44007528-44007051)
	1-479, gnl\|Mm7\|chr11 (96431101-96431576)