Non-Coding RNA Search

Ss1.1-Pig1-118I22.5

Sequence:


               
               GGGATCGCGTTCGCACTGCCCCCCATCCACCACAGCATCAGAGAAACAGACTTGACGCTA
GAAGAGAGTCCCAGGTTAGAGGATTTAAAGCCAAGACTGCGTTTGACCCCCTGCGACGAA
TTTATAACGGATTTAACCTCTGGCCCAGAATACCTCCTCCTCTCGGGGCCCGATTTCCCT
CTCTGTGGCGACCCCTGTCCTCCCGCAATTCTGTCTGATCACCCCAAACCTCCCCTCCCT
CAGCCCCAGCTTCATTTACCTCCGACTCATCTGGTCTTATTTTTAGCTCCAGCTTTTTTC
CTTTCTTAATATGGCGATGAGCTCTTAGGCCAGTGTGGGGACAGGGGCTGAGGAGCCCTG
GGCATTGGGGGAGGGGGAGGGGAAGGAAGCTCTGAGAGCCCGGGTGAGAGGTGCTGGAGG
TAGGAGGATCCCGGCCCTCACGGAGCCGGCCTGGCCGCATAAAGTTATCTGTCTCTCCTG
CCAATCCTGGAGACATATTTAGACGGGACCAGGTGGGGGCCGAGGGGTGCCAACCTCGGG
GGCAGCTCCGGGGCCCTCCCCGCCCCTGCTCCTATTCCTCCTCCTGACCCTTTTTCTCTT
GGCTCTGTCGGCAATTTCTCCAGGACCCAGCAGCGTCCTCTGTCCACTGCTCTGGGCCGT
TCCCCACACCCCCCCCAACTCAGGATTCGGGACCCAGGGGCTCCTCCCTCCCCCAGCTAA
CCTCTTCTGGACCAGGAGAGCCGACCCAGACCCCTCTACCTCCATGAGCGCTGCAGACAG
GATGGGGGCCAGAGCTGTGCCCGGCCTGCGGCTGGCACTGCTGTTACTGCGTGGTGCTAG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGATCGCGTTCGCACTGCCCCCCATCCACCACAGCATCAGAGAAACAGACTTGACGCTA
GAAGAGAGTCCCAGGTTAGAGGATTTAAAGCCAAGACTGCGTTTGACCCCCTGCGACGAA
TTTATAACGGATTTAACCTCTGGCCCAGAATACCTCCTCCTCTCGGGGCCCGATTTCCCT
CTCTGTGGCGACCCCTGTCCTCCCGCAATTCTGTCTGATCACCCCAAACCTCCCCTCCCT
CAGCCCCAGCTTCATTTACCTCCGACTCATCTGGTCTTATTTTTAGCTCCAGCTTTTTTC
CTTTCTTAATATGGCGATGAGCTCTTAGGCCAGTGTGGGGACAGGGGCTGAGGAGCCCTG
GGCATTGGGGGAGGGGGAGGGGAAGGAAGCTCTGAGAGCCCGGGTGAGAGGTGCTGGAGG
TAGGAGGATCCCGGCCCTCACGGAGCCGGCCTGGCCGCATAAAGTTATCTGTCTCTCCTG
CCAATCCTGGAGACATATTTAGACGGGACCAGGTGGGGGCCGAGGGGTGCCAACCTCGGG
GGCAGCTCCGGGGCCCTCCCCGCCCCTGCTCCTATTCCTCCTCCTGACCCTTTTTCTCTT
GGCTCTGTCGGCAATTTCTCCAGGACCCAGCAGCGTCCTCTGTCCACTGCTCTGGGCCGT
TCCCCACACCCCCCCCAACTCAGGATTCGGGACCCAGGGGCTCCTCCCTCCCCCAGCTAA
CCTCTTCTGGACCAGGAGAGCCGACCCAGACCCCTCTACCTCCATGAGCGCTGCAGACAG
GATGGGGGCCAGAGCTGTGCCCGGCCTGCGGCTGGCACTGCTGTTACTGCGTGGTGCTAG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               233-385, - strand, RNAz p=0.747522
               

               
               502-761, - strand, RNAz p=0.889456

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               233-385, - strand, RNAz p=0.747522
               

               
               502-761, - strand, RNAz p=0.889456

Predicted microRNA(s): 2 entry(ies)

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Predicted microRNA(s): 2 entry(ies)

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               246-376, + strand, RNAmicro p=0.999982
               

               
               683-827, - strand, RNAmicro p=0.998807

Predicted microRNA(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               246-376, + strand, RNAmicro p=0.999982
               

               
               683-827, - strand, RNAmicro p=0.998807

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               2-840, gnl|bosTau2|chr3 (4849729-4848898)
               

               
               2-840, gnl|Hg17|chr1 (156972831-156973690)
               

               
               2-840, gnl|Mm7|chr1 (172190633-172189788)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-840, gnl|bosTau2|chr3 (4849729-4848898)
               

               
               2-840, gnl|Hg17|chr1 (156972831-156973690)
               

               
               2-840, gnl|Mm7|chr1 (172190633-172189788)

	233-385, - strand, RNAz p=0.747522
	502-761, - strand, RNAz p=0.889456

	246-376, + strand, RNAmicro p=0.999982
	683-827, - strand, RNAmicro p=0.998807

	2-840, gnl\|bosTau2\|chr3 (4849729-4848898)
	2-840, gnl\|Hg17\|chr1 (156972831-156973690)
	2-840, gnl\|Mm7\|chr1 (172190633-172189788)