Non-Coding RNA Search

Ss1.1-Pig1-119F16.5

Sequence:


               
               GGCCACCTTATTCATGGAGGAATTGTTCTGCCCCTGATTTATTTTGTTTTCACGCGGAAA
AACCCATTCAGGTTCCTCCTGGGCCTCGTCACGCCATTTGCAACAGCATTTGCCACCTGC
TCCAGCTCAGCAACCCTTCCCTCGATGATGAAGTGCATTGAAGATAACAATGGTGTAGAC
AAGAGGATCAGCAGGTTCATTCTTCCCATCGGGGCCACCGTGAACATGGACGGAGCTGCC
ATCTTCCAGTGCGTGGCCGCCGTGTTCATTGCCCAGCTCAACAATGTGGAGCTGAAAGCA
GGACAGATTTTCACCATCCTAGTGACAGCCACGGCATCCAGTGTTGGAGCAGCAGGTGTG
CCAGCTGGAGGGGTCCTCACCATCGCCATTATCCTGGAGGCCATCGGGCTGCCCACTCAA
GACCTCTCTTTGATCCTGGCTGTGGACTGGATTGTGGACCGCACCACCACTGTGGTGAAT
GTGGAGGGCGATGCTCTGGGTGCCGGCATCCTCCACCACCTGAACCAGAAGGCCATGAAG
AGGGGAGAGCAGGAGCTGAGCGAGGTCAAAGTGGAGGCCGTCCCCAACTGCAAATCAGAG
GAGGAAACATCACCCCTGGTGACACACGCAAACCCTGCCGGCCCAGCGGCCAGCACGCCT
GAGTCCAAGGAGTCGGTTCTGTGATGGGGCTGAGCTTCCAGCTCGCCTGCCGGGGGTGCC
GTCCCCGTCAGTCTGGCCGCAGGGTCCCCCCAGCATCACCCTCGCCGACTTTTAGTCTCC
CGAGCAATGCTTTGGCCCAGTCACCAGTTTGAGGATTACTTCTCGGCACAGGCATCGGGC
TTCCCAGTGGGAAGTGGTTCCGAGGACCACAACACTCTGACACTTGGCTTGACCATGTCA
AGGTGCAACTATGTGCACCCAGGCTCTGTTTGTAAT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCCACCTTATTCATGGAGGAATTGTTCTGCCCCTGATTTATTTTGTTTTCACGCGGAAA
AACCCATTCAGGTTCCTCCTGGGCCTCGTCACGCCATTTGCAACAGCATTTGCCACCTGC
TCCAGCTCAGCAACCCTTCCCTCGATGATGAAGTGCATTGAAGATAACAATGGTGTAGAC
AAGAGGATCAGCAGGTTCATTCTTCCCATCGGGGCCACCGTGAACATGGACGGAGCTGCC
ATCTTCCAGTGCGTGGCCGCCGTGTTCATTGCCCAGCTCAACAATGTGGAGCTGAAAGCA
GGACAGATTTTCACCATCCTAGTGACAGCCACGGCATCCAGTGTTGGAGCAGCAGGTGTG
CCAGCTGGAGGGGTCCTCACCATCGCCATTATCCTGGAGGCCATCGGGCTGCCCACTCAA
GACCTCTCTTTGATCCTGGCTGTGGACTGGATTGTGGACCGCACCACCACTGTGGTGAAT
GTGGAGGGCGATGCTCTGGGTGCCGGCATCCTCCACCACCTGAACCAGAAGGCCATGAAG
AGGGGAGAGCAGGAGCTGAGCGAGGTCAAAGTGGAGGCCGTCCCCAACTGCAAATCAGAG
GAGGAAACATCACCCCTGGTGACACACGCAAACCCTGCCGGCCCAGCGGCCAGCACGCCT
GAGTCCAAGGAGTCGGTTCTGTGATGGGGCTGAGCTTCCAGCTCGCCTGCCGGGGGTGCC
GTCCCCGTCAGTCTGGCCGCAGGGTCCCCCCAGCATCACCCTCGCCGACTTTTAGTCTCC
CGAGCAATGCTTTGGCCCAGTCACCAGTTTGAGGATTACTTCTCGGCACAGGCATCGGGC
TTCCCAGTGGGAAGTGGTTCCGAGGACCACAACACTCTGACACTTGGCTTGACCATGTCA
AGGTGCAACTATGTGCACCCAGGCTCTGTTTGTAAT

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               Q6UA48_PIG

Coded protein: 1 entry(ies)

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Protein identifier


               
               Q6UA48_PIG

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               456-574, - strand, RNAz p=0.693207
               

               
               689-800, - strand, RNAz p=0.91787

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               456-574, - strand, RNAz p=0.693207
               

               
               689-800, - strand, RNAz p=0.91787

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               122-320, gnl|bosTau2|chr11 (41638406-41638604)
               

               
               122-320, gnl|Hg17|chr2 (65156846-65157050)
               

               
               122-320, gnl|Mm7|chr11 (20260104-20259901)
               


               
               456-935, gnl|bosTau2|chr11 (41641046-41641524)
               

               
               456-935, gnl|Hg17|chr2 (65159697-65160194)
               

               
               456-935, gnl|Mm7|chr11 (20256509-20256043)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               122-320, gnl|bosTau2|chr11 (41638406-41638604)
               

               
               122-320, gnl|Hg17|chr2 (65156846-65157050)
               

               
               122-320, gnl|Mm7|chr11 (20260104-20259901)
               


               
               456-935, gnl|bosTau2|chr11 (41641046-41641524)
               

               
               456-935, gnl|Hg17|chr2 (65159697-65160194)
               

               
               456-935, gnl|Mm7|chr11 (20256509-20256043)

	456-574, - strand, RNAz p=0.693207
	689-800, - strand, RNAz p=0.91787

	122-320, gnl\|bosTau2\|chr11 (41638406-41638604)
	122-320, gnl\|Hg17\|chr2 (65156846-65157050)
	122-320, gnl\|Mm7\|chr11 (20260104-20259901)

	456-935, gnl\|bosTau2\|chr11 (41641046-41641524)
	456-935, gnl\|Hg17\|chr2 (65159697-65160194)
	456-935, gnl\|Mm7\|chr11 (20256509-20256043)