Ss1.1-Pig1-120N05.5
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GCCAGATTGCCAGATCAGCTTTAACTGCCCTCAGAAGCGTGTGAAGCGTGTGGTGTCCTG
CTTCCCAGATGGTAGTGTTATGTAGAGCACTTTGGAGAGGAAAGGAATGGGGTTGTGGGG
TACTCCTGGCCTCAGTTCTGAGCTATGGAAGGCATTCCTGAGAATGAGTCAGGTCAGCTG
TGCCTCCGTTGATAGGCATTCCTGTGTGTCTGTCAGGGATGTATTTTATGAGGTGCTTCG
AGAGTGGGAAGACCGCCACGAGGAGCCCGGCTGGGATTTTGAGAAGGGCTTGGGCAGCAG
GATCAGAGCCATGATGAGTCAACTCTCTGCAGCCTGCAGCCACAGCCATTTTGTTCGACT
TTTCCAAAAACAACTTCTCCAGATGTGTCAGAGTCCTGGTGGTGCTGGGGGCACCGTCTT
GGGTGAGACTCCGGATGTGTTAAATATGCTTGGAGCTGACAAGCTAGGGCGGCTGAGGCG
CCTACAGGAACGGCTTGTGGCCCCTCAGAGCAGCGGGGGTCCCTGCCCACCCCCCACTTT |
Blue-coloured subsequences are predicted RNA structures by RNAz
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GCCAGATTGCCAGATCAGCTTTAACTGCCCTCAGAAGCGTGTGAAGCGTGTGGTGTCCTG
CTTCCCAGATGGTAGTGTTATGTAGAGCACTTTGGAGAGGAAAGGAATGGGGTTGTGGGG
TACTCCTGGCCTCAGTTCTGAGCTATGGAAGGCATTCCTGAGAATGAGTCAGGTCAGCTG
TGCCTCCGTTGATAGGCATTCCTGTGTGTCTGTCAGGGATGTATTTTATGAGGTGCTTCG
AGAGTGGGAAGACCGCCACGAGGAGCCCGGCTGGGATTTTGAGAAGGGCTTGGGCAGCAG
GATCAGAGCCATGATGAGTCAACTCTCTGCAGCCTGCAGCCACAGCCATTTTGTTCGACT
TTTCCAAAAACAACTTCTCCAGATGTGTCAGAGTCCTGGTGGTGCTGGGGGCACCGTCTT
GGGTGAGACTCCGGATGTGTTAAATATGCTTGGAGCTGACAAGCTAGGGCGGCTGAGGCG
CCTACAGGAACGGCTTGTGGCCCCTCAGAGCAGCGGGGGTCCCTGCCCACCCCCCACTTT |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
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395-488, + strand, RNAmicro p=0.999961 |
PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro
|
395-488, + strand, RNAmicro p=0.999961 |
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4-306, gnl|bosTau2|chr26 (30154333-30154638) |
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4-306, gnl|Mm7|chr2 (120468993-120468707) |
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374-540, gnl|bosTau2|chr26 (30156148-30156314) |
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374-540, gnl|canFam2|chr30 (12656689-12656850) |
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374-540, gnl|danRer3|chr17 (43773404-43773565) |
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374-540, gnl|dasNov1|scaffold_6445 (46880-46728) |
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374-540, gnl|echTel1|scaffold_293686 (11075-11236) |
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374-540, gnl|fr1|chrUn (130524643-130524804) |
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374-540, gnl|galGal2|chr5 (23110956-23111124) |
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374-540, gnl|hg17|chr15 (40811158-40811319) |
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374-540, gnl|Hg17|chr15 (40811324-40811158) |
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374-540, gnl|loxAfr1|scaffold_56873 (4828-4667) |
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374-540, gnl|mm7|chr2 (120467487-120467648) |
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374-540, gnl|Mm7|chr2 (120467653-120467487) |
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374-540, gnl|monDom2|scaffold_53 (11716562-11716395) |
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374-540, gnl|oryCun1|scaffold_199912 (122742-122903) |
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374-540, gnl|rheMac2|chr7 (21200927-21201088) |
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374-540, gnl|rn3|chr3 (107401178-107401339) |
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374-540, gnl|tetNig1|chr10 (10420052-10420212) |
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374-540, gnl|xenTro1|scaffold_799 (273794-273624) |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
|
4-306, gnl|bosTau2|chr26 (30154333-30154638) |
|
4-306, gnl|Mm7|chr2 (120468993-120468707) |
| |
|
374-540, gnl|bosTau2|chr26 (30156148-30156314) |
|
374-540, gnl|canFam2|chr30 (12656689-12656850) |
|
374-540, gnl|danRer3|chr17 (43773404-43773565) |
|
374-540, gnl|dasNov1|scaffold_6445 (46880-46728) |
|
374-540, gnl|echTel1|scaffold_293686 (11075-11236) |
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374-540, gnl|fr1|chrUn (130524643-130524804) |
|
374-540, gnl|galGal2|chr5 (23110956-23111124) |
|
374-540, gnl|hg17|chr15 (40811158-40811319) |
|
374-540, gnl|Hg17|chr15 (40811324-40811158) |
|
374-540, gnl|loxAfr1|scaffold_56873 (4828-4667) |
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374-540, gnl|mm7|chr2 (120467487-120467648) |
|
374-540, gnl|Mm7|chr2 (120467653-120467487) |
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374-540, gnl|monDom2|scaffold_53 (11716562-11716395) |
|
374-540, gnl|oryCun1|scaffold_199912 (122742-122903) |
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374-540, gnl|rheMac2|chr7 (21200927-21201088) |
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374-540, gnl|rn3|chr3 (107401178-107401339) |
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374-540, gnl|tetNig1|chr10 (10420052-10420212) |
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374-540, gnl|xenTro1|scaffold_799 (273794-273624) |
