Non-Coding RNA Search

Ss1.1-Pig1-122C13.5

Sequence:


               
               GGCTTGCCGGGCCTGGAGGCCCACAGGCTGGCCGAGCCGGGCAGGGCTCTCCACGGACTG
GACTCGAGGCCCTGGAGCAGGCGACGCGGAGGCTGCTGTCCCCTGTGATGACAGGTGGCC
AAGAAGGACCTCAGAATGAGATGAGCGGGGGCCTCAGGCCAAGGAATGGGGGACAGAGAG
GCCCCGGAGCGGGTGGGAGAGCAGAGCGCCCTCTCTGTTCAATAGAGAGCTCTCCACACC
CAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCTTTTTAAATTTTCCTTGGGGGGGCCAA
ATTTTCCCCTTCCCCTTTTTTTTTGAAAAAGGGGGCTAAAAGGATCAAAGTTAACGAACG
CGGGCATGCAACGAAAAAGTTTTTTAATAGGGCCAC------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
GGGGGGGGGTTA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCTTGCCGGGCCTGGAGGCCCACAGGCTGGCCGAGCCGGGCAGGGCTCTCCACGGACTG
GACTCGAGGCCCTGGAGCAGGCGACGCGGAGGCTGCTGTCCCCTGTGATGACAGGTGGCC
AAGAAGGACCTCAGAATGAGATGAGCGGGGGCCTCAGGCCAAGGAATGGGGGACAGAGAG
GCCCCGGAGCGGGTGGGAGAGCAGAGCGCCCTCTCTGTTCAATAGAGAGCTCTCCACACC
CAAAAAAAAAAAAAAAAAAAAAAAGGGGGGGCCTTTTTAAATTTTCCTTGGGGGGGCCAA
ATTTTCCCCTTCCCCTTTTTTTTTGAAAAAGGGGGCTAAAAGGATCAAAGTTAACGAACG
CGGGCATGCAACGAAAAAGTTTTTTAATAGGGCCAC------------------------
------------------------------------------------------------
------------------------------------------------------------
------------------------------------------------------------
GGGGGGGGGTTA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               142-240, + strand, RNAz p=0.998377

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               142-240, + strand, RNAz p=0.998377

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of BC040534, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of BC040534, +

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               1-240, gnl|bosTau2|chr5 (24676210-24675965)
               

               
               1-240, gnl|hg17|chr12 (46417180-46417568)
               

               
               1-240, gnl|Hg17|chr12 (46417565-46417307)
               

               
               1-240, gnl|mm7|chr15 (97745659-97746083)
               

               
               1-240, gnl|Mm7|chr15 (97746080-97745854)
               

               
               1-240, gnl|monDom2|scaffold_262 (143978-144325)
               

               
               1-240, gnl|panTro1|chr10 (47401391-47401781)
               

               
               1-240, gnl|rheMac2|chr11 (44804934-44805320)
               

               
               1-240, gnl|rn3|chr7 (136529450-136529845)

Aligned organism(s): 9 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-240, gnl|bosTau2|chr5 (24676210-24675965)
               

               
               1-240, gnl|hg17|chr12 (46417180-46417568)
               

               
               1-240, gnl|Hg17|chr12 (46417565-46417307)
               

               
               1-240, gnl|mm7|chr15 (97745659-97746083)
               

               
               1-240, gnl|Mm7|chr15 (97746080-97745854)
               

               
               1-240, gnl|monDom2|scaffold_262 (143978-144325)
               

               
               1-240, gnl|panTro1|chr10 (47401391-47401781)
               

               
               1-240, gnl|rheMac2|chr11 (44804934-44805320)
               

               
               1-240, gnl|rn3|chr7 (136529450-136529845)

	1-240, gnl\|bosTau2\|chr5 (24676210-24675965)
	1-240, gnl\|hg17\|chr12 (46417180-46417568)
	1-240, gnl\|Hg17\|chr12 (46417565-46417307)
	1-240, gnl\|mm7\|chr15 (97745659-97746083)
	1-240, gnl\|Mm7\|chr15 (97746080-97745854)
	1-240, gnl\|monDom2\|scaffold_262 (143978-144325)
	1-240, gnl\|panTro1\|chr10 (47401391-47401781)
	1-240, gnl\|rheMac2\|chr11 (44804934-44805320)
	1-240, gnl\|rn3\|chr7 (136529450-136529845)