Non-Coding RNA Search

Ss1.1-Pig1-123H07.5

Sequence:


               
               CGAATCACAAAAGACAAGTGAGAAGGGCAAGCCTAGCTGAAAAGGAGCCCAAGAATCCAT
GGAGGACGAAGCTCACTCCTTCTGACTTCCCGCCCTCAGCAGCGGCATCCATAAAGGACA
GCCCGGCTAAGACTCTCTGGGTCTGGTTGGAGATAGATCAGCCACTTAGTCCTTGGGAGC
AGTCTTCTGAGGCCTTGTAACCATTCAGATGATGTCAGCGGCAAGACCAAGTTCAGACTG
TTTGGAAAATTGTAATTGCAAAGTCCATTTCCTCTGTAGCATCAGGTCATCCCACTAGAC
CTTGTGTAAAGCCCACCCACCATGGTGGTTTTGAATAGCCTCATCTTTGTGCACATGTCC
TTTAAGGGAGGACGTTTTGTGCATGTGGAATCAGCCTGGTGCCTTAGATACCTCTTGCCT
CCTATAGCTTGGTGAGCTGGGTAAGAATTTGGAAACTCTGAAAGCCTGCGATGGGGAGCG
TGCCTGACCAACTCTTTCAGTGACCCATCAGTAGGAACGGTGCCCTGTGAAACAAAGCAC
CTTGCGAGGCAAAATGGCTGTAACTGCCCAGTGAGGTCTTCCTGGATGTAAAGAACAAAA
GCCTTCTTGGAGAAGAAAATGGGGAGTTAGACTGGCAATCAAAAAGATTTGGCTGCTGCT
TGGCTGTTCTGATACAGCCCCTCCCGGGCCTGCAGAGGCTGCATGAGTCTGGGAGGCTGC
CATTACTCTAGCACATATGGCTTCCATTAGCCTCCTTTTTGCTAGGAAATGTAATTAACG
GTTTAAGACTTAACCATTTGTGCTGGGTGTGTGTTTTCCTGGTCTGTC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CGAATCACAAAAGACAAGTGAGAAGGGCAAGCCTAGCTGAAAAGGAGCCCAAGAATCCAT
GGAGGACGAAGCTCACTCCTTCTGACTTCCCGCCCTCAGCAGCGGCATCCATAAAGGACA
GCCCGGCTAAGACTCTCTGGGTCTGGTTGGAGATAGATCAGCCACTTAGTCCTTGGGAGC
AGTCTTCTGAGGCCTTGTAACCATTCAGATGATGTCAGCGGCAAGACCAAGTTCAGACTG
TTTGGAAAATTGTAATTGCAAAGTCCATTTCCTCTGTAGCATCAGGTCATCCCACTAGAC
CTTGTGTAAAGCCCACCCACCATGGTGGTTTTGAATAGCCTCATCTTTGTGCACATGTCC
TTTAAGGGAGGACGTTTTGTGCATGTGGAATCAGCCTGGTGCCTTAGATACCTCTTGCCT
CCTATAGCTTGGTGAGCTGGGTAAGAATTTGGAAACTCTGAAAGCCTGCGATGGGGAGCG
TGCCTGACCAACTCTTTCAGTGACCCATCAGTAGGAACGGTGCCCTGTGAAACAAAGCAC
CTTGCGAGGCAAAATGGCTGTAACTGCCCAGTGAGGTCTTCCTGGATGTAAAGAACAAAA
GCCTTCTTGGAGAAGAAAATGGGGAGTTAGACTGGCAATCAAAAAGATTTGGCTGCTGCT
TGGCTGTTCTGATACAGCCCCTCCCGGGCCTGCAGAGGCTGCATGAGTCTGGGAGGCTGC
CATTACTCTAGCACATATGGCTTCCATTAGCCTCCTTTTTGCTAGGAAATGTAATTAACG
GTTTAAGACTTAACCATTTGTGCTGGGTGTGTGTTTTCCTGGTCTGTC

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               675-764, + strand, RNAz p=0.99858

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               675-764, + strand, RNAz p=0.99858

Aligned organism(s): 6 entry(ies)

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Aligned organism(s): 6 entry(ies)

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               155-479, gnl|bosTau2|chr27 (21771609-21771926)
               

               
               155-479, gnl|Hg17|chr8 (38385050-38385364)
               


               
               503-656, gnl|bosTau2|chr27 (21771989-21772144)
               

               
               503-656, gnl|Hg17|chr8 (38385389-38385519)
               


               
               675-827, gnl|bosTau2|chr27 (21772141-21772299)
               

               
               675-827, gnl|Hg17|chr8 (38385516-38385699)

Aligned organism(s): 6 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               155-479, gnl|bosTau2|chr27 (21771609-21771926)
               

               
               155-479, gnl|Hg17|chr8 (38385050-38385364)
               


               
               503-656, gnl|bosTau2|chr27 (21771989-21772144)
               

               
               503-656, gnl|Hg17|chr8 (38385389-38385519)
               


               
               675-827, gnl|bosTau2|chr27 (21772141-21772299)
               

               
               675-827, gnl|Hg17|chr8 (38385516-38385699)

	155-479, gnl\|bosTau2\|chr27 (21771609-21771926)
	155-479, gnl\|Hg17\|chr8 (38385050-38385364)

	503-656, gnl\|bosTau2\|chr27 (21771989-21772144)
	503-656, gnl\|Hg17\|chr8 (38385389-38385519)

	675-827, gnl\|bosTau2\|chr27 (21772141-21772299)
	675-827, gnl\|Hg17\|chr8 (38385516-38385699)