Non-Coding RNA Search

Ss1.1-Pig1-123J02.5

Sequence:


               
               TGGATGCATAGGAGTGCATGTGCAGGTGTGTGTGTATGTGTGAGGGGTACAGGTGTAGAG
TACATGTGTGTGAGCGCACATGTATCTGTGTGGCACTATGTATGCAGGGGGTGGAGAGAG
TACAAATGTGCGTGCAAGTATAGGATACATGTACAGGGATGTGTGTAGCTGGGAAGGTGT
GGATATATACCAAGCATGCCAGCATATGCATGTGTGTGAGTGGATGGATACGCATTTGTG
CGTCTGCATGCATGTGTGCAGGTATGTGTGAATGTCTGCCTGCATGTGTGAGAACTGTGT
GTGTACCTCCAGAGTGAGTCCTGAGCAACTTATGATTGGCATGCAAATGCAAATCATATG
CAAGTGCAGGCTGAGTCAGTGCAGATTCCCTCCCCAGCTCTGGCCTCCACCGCCCAGGCA
GGTGGTCCAGCAGGTGCAAGAGCAGCCAAGCCCAGCCGTCCCTGGCCCCCAGCACTGCCC
ACCATACCTCCATCCTGAGGGAAAGGGCCTTTGCAGGGGCTCTTGCCTCGATTTTCCTGC
TCCTTTAATTGTTAAGATTGTCAGTTCAGACCCTGCTCTATATTCCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGGATGCATAGGAGTGCATGTGCAGGTGTGTGTGTATGTGTGAGGGGTACAGGTGTAGAG
TACATGTGTGTGAGCGCACATGTATCTGTGTGGCACTATGTATGCAGGGGGTGGAGAGAG
TACAAATGTGCGTGCAAGTATAGGATACATGTACAGGGATGTGTGTAGCTGGGAAGGTGT
GGATATATACCAAGCATGCCAGCATATGCATGTGTGTGAGTGGATGGATACGCATTTGTG
CGTCTGCATGCATGTGTGCAGGTATGTGTGAATGTCTGCCTGCATGTGTGAGAACTGTGT
GTGTACCTCCAGAGTGAGTCCTGAGCAACTTATGATTGGCATGCAAATGCAAATCATATG
CAAGTGCAGGCTGAGTCAGTGCAGATTCCCTCCCCAGCTCTGGCCTCCACCGCCCAGGCA
GGTGGTCCAGCAGGTGCAAGAGCAGCCAAGCCCAGCCGTCCCTGGCCCCCAGCACTGCCC
ACCATACCTCCATCCTGAGGGAAAGGGCCTTTGCAGGGGCTCTTGCCTCGATTTTCCTGC
TCCTTTAATTGTTAAGATTGTCAGTTCAGACCCTGCTCTATATTCCCA

Predicted RNA structure(s): 4 entry(ies)

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Predicted RNA structure(s): 4 entry(ies)

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               66-228, + strand, RNAz p=0.97921
               

               
               320-439, - strand, RNAz p=0.814923
               

               
               332-451, - strand, RNAz p=0.793524
               

               
               464-574, - strand, RNAz p=0.700401

Predicted RNA structure(s): 4 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               66-228, + strand, RNAz p=0.97921
               

               
               320-439, - strand, RNAz p=0.814923
               

               
               332-451, - strand, RNAz p=0.793524
               

               
               464-574, - strand, RNAz p=0.700401

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               277-346, + strand, RNAmicro p=0.987754

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               277-346, + strand, RNAmicro p=0.987754

Aligned organism(s): 11 entry(ies)

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Aligned organism(s): 11 entry(ies)

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               66-588, gnl|bosTau2|chr22 (37638778-37638240)
               

               
               66-588, gnl|canFam2|chr20 (40912316-40911850)
               

               
               66-588, gnl|echTel1|scaffold_244459 (6294-5750)
               

               
               66-588, gnl|hg17|chr3 (51725891-51726507)
               

               
               66-588, gnl|Hg17|chr3 (51726440-51725890)
               

               
               66-588, gnl|mm7|chr9 (106375778-106375109)
               

               
               66-588, gnl|Mm7|chr9 (106375173-106375777)
               

               
               66-588, gnl|oryCun1|scaffold_206513 (11807-11178)
               

               
               66-588, gnl|panTro1|chr2 (53327641-53328266)
               

               
               66-588, gnl|rheMac2|chr2 (84722372-84721767)
               

               
               66-588, gnl|rn3|chr8 (111859691-111859071)

Aligned organism(s): 11 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               66-588, gnl|bosTau2|chr22 (37638778-37638240)
               

               
               66-588, gnl|canFam2|chr20 (40912316-40911850)
               

               
               66-588, gnl|echTel1|scaffold_244459 (6294-5750)
               

               
               66-588, gnl|hg17|chr3 (51725891-51726507)
               

               
               66-588, gnl|Hg17|chr3 (51726440-51725890)
               

               
               66-588, gnl|mm7|chr9 (106375778-106375109)
               

               
               66-588, gnl|Mm7|chr9 (106375173-106375777)
               

               
               66-588, gnl|oryCun1|scaffold_206513 (11807-11178)
               

               
               66-588, gnl|panTro1|chr2 (53327641-53328266)
               

               
               66-588, gnl|rheMac2|chr2 (84722372-84721767)
               

               
               66-588, gnl|rn3|chr8 (111859691-111859071)

	66-228, + strand, RNAz p=0.97921
	320-439, - strand, RNAz p=0.814923
	332-451, - strand, RNAz p=0.793524
	464-574, - strand, RNAz p=0.700401

	66-588, gnl\|bosTau2\|chr22 (37638778-37638240)
	66-588, gnl\|canFam2\|chr20 (40912316-40911850)
	66-588, gnl\|echTel1\|scaffold_244459 (6294-5750)
	66-588, gnl\|hg17\|chr3 (51725891-51726507)
	66-588, gnl\|Hg17\|chr3 (51726440-51725890)
	66-588, gnl\|mm7\|chr9 (106375778-106375109)
	66-588, gnl\|Mm7\|chr9 (106375173-106375777)
	66-588, gnl\|oryCun1\|scaffold_206513 (11807-11178)
	66-588, gnl\|panTro1\|chr2 (53327641-53328266)
	66-588, gnl\|rheMac2\|chr2 (84722372-84721767)
	66-588, gnl\|rn3\|chr8 (111859691-111859071)