Non-Coding RNA Search

Ss1.1-Pig1-124M16.5

Sequence:


               
               GTTGATATTTCTGCCCCCTCCAGACGGAAAAGGAAAGAGAGAAGATAGAACTGTAATGAT
CCCCTCCCTCAGGGTACAGGCATGAAAATGGTTACCATTAACCAGATGGTCCATTTTAAC
CCCATGGCAGGAGCGAAGCAGTATCTGTAGCAAGAGGTTTGTGTTACCCACTCACGCTCA
CCAGAGAGGAAAGAGGTGAGACTCGCCAAGTGTGGTCCAGAGACCACCCACATTTGAACT
TCCTGAAATTGGCATGTTTGATGCACAATCCTGGGCCCTACCTCAAACCCATTAATTCTG
CATCTCTGGAAGCAGGGCCAAGAAATCTGCACTTGCCACAAACTGAATGATTCTGTTGCA
CATGGAAGTCTGAGGACCGCTGCTCTAGAGGCCCTGTACTGCTAACCTTGGGCGTTGAGC
GCCCTCTGAGCCATGAAAGAAGATATTTGTAGCGAAGGAAAGTGGGTCAGGGTGGGGGGT
CAGGGTGGAAGCTGTCAAAGCCTCCTGTCTGGAGCTGGCACTTCCCATTCCACTTTCTCA
TTTTTCCTTCTTGATGACCATAGATACGTCCCAAAGGCAAAAGTGCAGGGTTACAGCACA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GTTGATATTTCTGCCCCCTCCAGACGGAAAAGGAAAGAGAGAAGATAGAACTGTAATGAT
CCCCTCCCTCAGGGTACAGGCATGAAAATGGTTACCATTAACCAGATGGTCCATTTTAAC
CCCATGGCAGGAGCGAAGCAGTATCTGTAGCAAGAGGTTTGTGTTACCCACTCACGCTCA
CCAGAGAGGAAAGAGGTGAGACTCGCCAAGTGTGGTCCAGAGACCACCCACATTTGAACT
TCCTGAAATTGGCATGTTTGATGCACAATCCTGGGCCCTACCTCAAACCCATTAATTCTG
CATCTCTGGAAGCAGGGCCAAGAAATCTGCACTTGCCACAAACTGAATGATTCTGTTGCA
CATGGAAGTCTGAGGACCGCTGCTCTAGAGGCCCTGTACTGCTAACCTTGGGCGTTGAGC
GCCCTCTGAGCCATGAAAGAAGATATTTGTAGCGAAGGAAAGTGGGTCAGGGTGGGGGGT
CAGGGTGGAAGCTGTCAAAGCCTCCTGTCTGGAGCTGGCACTTCCCATTCCACTTTCTCA
TTTTTCCTTCTTGATGACCATAGATACGTCCCAAAGGCAAAAGTGCAGGGTTACAGCACA

Predicted RNA structure(s): 2 entry(ies)

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Predicted RNA structure(s): 2 entry(ies)

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               231-346, - strand, RNAz p=0.706374
               

               
               232-346, - strand, RNAz p=0.937061

Predicted RNA structure(s): 2 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               231-346, - strand, RNAz p=0.706374
               

               
               232-346, - strand, RNAz p=0.937061

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               251-388, - strand, RNAmicro p=0.97989

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               251-388, - strand, RNAmicro p=0.97989

Aligned organism(s): 13 entry(ies)

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Aligned organism(s): 13 entry(ies)

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               2-600, gnl|bosTau2|chr7 (48022291-48021718)
               

               
               2-600, gnl|canFam2|chr4 (55973973-55973447)
               

               
               2-600, gnl|dasNov1|scaffold_18697 (3737-3135)
               

               
               2-600, gnl|echTel1|scaffold_282726 (35823-35298)
               

               
               2-600, gnl|hg17|chr5 (156753778-156754298)
               

               
               2-600, gnl|Hg17|chr5 (156753943-156754465)
               

               
               2-600, gnl|loxAfr1|scaffold_14046 (18624-19181)
               

               
               2-600, gnl|mm7|chr11 (46151858-46151371)
               

               
               2-600, gnl|Mm7|chr11 (46151712-46151246)
               

               
               2-600, gnl|oryCun1|scaffold_192727 (103831-104414)
               

               
               2-600, gnl|panTro1|chr4 (163754816-163755337)
               

               
               2-600, gnl|rheMac2|chr6 (153772592-153773119)
               

               
               2-600, gnl|rn3|chr10 (31323303-31322814)

Aligned organism(s): 13 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               2-600, gnl|bosTau2|chr7 (48022291-48021718)
               

               
               2-600, gnl|canFam2|chr4 (55973973-55973447)
               

               
               2-600, gnl|dasNov1|scaffold_18697 (3737-3135)
               

               
               2-600, gnl|echTel1|scaffold_282726 (35823-35298)
               

               
               2-600, gnl|hg17|chr5 (156753778-156754298)
               

               
               2-600, gnl|Hg17|chr5 (156753943-156754465)
               

               
               2-600, gnl|loxAfr1|scaffold_14046 (18624-19181)
               

               
               2-600, gnl|mm7|chr11 (46151858-46151371)
               

               
               2-600, gnl|Mm7|chr11 (46151712-46151246)
               

               
               2-600, gnl|oryCun1|scaffold_192727 (103831-104414)
               

               
               2-600, gnl|panTro1|chr4 (163754816-163755337)
               

               
               2-600, gnl|rheMac2|chr6 (153772592-153773119)
               

               
               2-600, gnl|rn3|chr10 (31323303-31322814)

	231-346, - strand, RNAz p=0.706374
	232-346, - strand, RNAz p=0.937061

	2-600, gnl\|bosTau2\|chr7 (48022291-48021718)
	2-600, gnl\|canFam2\|chr4 (55973973-55973447)
	2-600, gnl\|dasNov1\|scaffold_18697 (3737-3135)
	2-600, gnl\|echTel1\|scaffold_282726 (35823-35298)
	2-600, gnl\|hg17\|chr5 (156753778-156754298)
	2-600, gnl\|Hg17\|chr5 (156753943-156754465)
	2-600, gnl\|loxAfr1\|scaffold_14046 (18624-19181)
	2-600, gnl\|mm7\|chr11 (46151858-46151371)
	2-600, gnl\|Mm7\|chr11 (46151712-46151246)
	2-600, gnl\|oryCun1\|scaffold_192727 (103831-104414)
	2-600, gnl\|panTro1\|chr4 (163754816-163755337)
	2-600, gnl\|rheMac2\|chr6 (153772592-153773119)
	2-600, gnl\|rn3\|chr10 (31323303-31322814)