Non-Coding RNA Search

Ss1.1-Pig1-127H02.5

Sequence:


               
               GGGCGCCCTGTTGGGGCGTCTTTGAGAAGCGGTGGCGGGTGCTGAGGTGGTGGATGCGGG
CGTGAGCGGGTAGCGGAAGTGTGCGGACGTCCCCTCCTCCCCCGAAGCTGATCTGCGGAT
CTCATCCCCGGGCCTCGCCCCTCGCCTTCCCCAAACCCCGTCCACTCCCCTTTCATTGCT
CCGGGAGCCGTCGGGGCTGTTTCCCCTTTGGGAACGGAAAGGTACCGCAGAGGCTTAGAG
AGGGGAGGAAGGTGACATCAATTTGTGCATCTCCCAGACTAGCACCGAGGCACTGCTTGC
CGCTCAGGCCCCGTCGGATTGCCTGTCCTCCGGCAGCTCAGCGTGAAGGTGTGAACTCAG
CTTCCTTCAGAGCCTCCCCGCCATGACCTCCAAGAAGCTGGTGAACTCAGTGGCAGGCTG
TGCCGACGATGCCCTTGCTGGCCTGGTGGCCTGCAACCCCAGCCTGCAGCTCCTGCAAGG
CCACCGAGTGGCCCTCCGTTCTGACCTGGACAGTCTCAAGGGCCGGGTGGCCCTACTGTC
GGGTGGGGGCTCTGGCCATGAGCCTGCCCATGCCGGGTTCATAGGCAAGGGCATGCTCAC
AGGGGTCATCGCAGGAGCCGTGTTCACCTCCCCAGCAGTGGGCAGCATCCTGGCAGCCAT
CAGGGCAGTGGCCCAGGCGGGCACAGTGGGGACCCTCCTCATCGTGAAGAACTACACTGG
GGATCGGCTCAACTTCGGCCTGGCCCGGGAGCAGGCCCGGGCAGAGGGCATCCCCGTGGA
GATGGTGGTCGTTGGGGACGACAGCGCCTTCACCGTCCTGAAGAAGGCGGGTCGGCGGGG
GCTCTGTGGCACGGTGCTCATACACAAGGTGGCAGGTGCCCTGGCTGAGGCAGGTGTGGG
GCTGGAGGAGATCGCGAATCGGGTGAGCGTGGTCGCCAAGGCCATGGGAACCCTGGGAGT
GAGCCTGTCCTCCTGCAGCGTCCCCGGTTCCAGACCCACCTTTGAGCTCTCAGCCGATGA
GGTGGAGCTGGGCCTGGGGATCCA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGGCGCCCTGTTGGGGCGTCTTTGAGAAGCGGTGGCGGGTGCTGAGGTGGTGGATGCGGG
CGTGAGCGGGTAGCGGAAGTGTGCGGACGTCCCCTCCTCCCCCGAAGCTGATCTGCGGAT
CTCATCCCCGGGCCTCGCCCCTCGCCTTCCCCAAACCCCGTCCACTCCCCTTTCATTGCT
CCGGGAGCCGTCGGGGCTGTTTCCCCTTTGGGAACGGAAAGGTACCGCAGAGGCTTAGAG
AGGGGAGGAAGGTGACATCAATTTGTGCATCTCCCAGACTAGCACCGAGGCACTGCTTGC
CGCTCAGGCCCCGTCGGATTGCCTGTCCTCCGGCAGCTCAGCGTGAAGGTGTGAACTCAG
CTTCCTTCAGAGCCTCCCCGCCATGACCTCCAAGAAGCTGGTGAACTCAGTGGCAGGCTG
TGCCGACGATGCCCTTGCTGGCCTGGTGGCCTGCAACCCCAGCCTGCAGCTCCTGCAAGG
CCACCGAGTGGCCCTCCGTTCTGACCTGGACAGTCTCAAGGGCCGGGTGGCCCTACTGTC
GGGTGGGGGCTCTGGCCATGAGCCTGCCCATGCCGGGTTCATAGGCAAGGGCATGCTCAC
AGGGGTCATCGCAGGAGCCGTGTTCACCTCCCCAGCAGTGGGCAGCATCCTGGCAGCCAT
CAGGGCAGTGGCCCAGGCGGGCACAGTGGGGACCCTCCTCATCGTGAAGAACTACACTGG
GGATCGGCTCAACTTCGGCCTGGCCCGGGAGCAGGCCCGGGCAGAGGGCATCCCCGTGGA
GATGGTGGTCGTTGGGGACGACAGCGCCTTCACCGTCCTGAAGAAGGCGGGTCGGCGGGG
GCTCTGTGGCACGGTGCTCATACACAAGGTGGCAGGTGCCCTGGCTGAGGCAGGTGTGGG
GCTGGAGGAGATCGCGAATCGGGTGAGCGTGGTCGCCAAGGCCATGGGAACCCTGGGAGT
GAGCCTGTCCTCCTGCAGCGTCCCCGGTTCCAGACCCACCTTTGAGCTCTCAGCCGATGA
GGTGGAGCTGGGCCTGGGGATCCA

Predicted RNA structure(s): 1 entry(ies)

More info

Predicted RNA structure(s): 1 entry(ies)

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               400-559, + strand, RNAz p=0.945757

Predicted RNA structure(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               400-559, + strand, RNAz p=0.945757

Aligned organism(s): 8 entry(ies)

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Aligned organism(s): 8 entry(ies)

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               1-290, gnl|bosTau2|chr29 (30900840-30901129)
               

               
               1-290, gnl|Hg17|chr11 (60857301-60857568)
               


               
               363-576, gnl|bosTau2|chr29 (30904677-30904889)
               

               
               363-576, gnl|Hg17|chr11 (60861967-60862179)
               

               
               363-576, gnl|Mm7|chr19 (10280911-10280695)
               


               
               682-882, gnl|bosTau2|chr29 (30906014-30906213)
               

               
               682-882, gnl|Hg17|chr11 (60863297-60863496)
               

               
               682-882, gnl|Mm7|chr19 (10279343-10279144)

Aligned organism(s): 8 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-290, gnl|bosTau2|chr29 (30900840-30901129)
               

               
               1-290, gnl|Hg17|chr11 (60857301-60857568)
               


               
               363-576, gnl|bosTau2|chr29 (30904677-30904889)
               

               
               363-576, gnl|Hg17|chr11 (60861967-60862179)
               

               
               363-576, gnl|Mm7|chr19 (10280911-10280695)
               


               
               682-882, gnl|bosTau2|chr29 (30906014-30906213)
               

               
               682-882, gnl|Hg17|chr11 (60863297-60863496)
               

               
               682-882, gnl|Mm7|chr19 (10279343-10279144)

	1-290, gnl\|bosTau2\|chr29 (30900840-30901129)
	1-290, gnl\|Hg17\|chr11 (60857301-60857568)

	363-576, gnl\|bosTau2\|chr29 (30904677-30904889)
	363-576, gnl\|Hg17\|chr11 (60861967-60862179)
	363-576, gnl\|Mm7\|chr19 (10280911-10280695)

	682-882, gnl\|bosTau2\|chr29 (30906014-30906213)
	682-882, gnl\|Hg17\|chr11 (60863297-60863496)
	682-882, gnl\|Mm7\|chr19 (10279343-10279144)