Non-Coding RNA Search

Ss1.1-Pig1-129E23.5

Sequence:


               
               TGTAAACCTAATTTTAAAGCATTCATCCTTTTTTATCTCCTCCTTCAAAAAGCACTGTCA
GTGAAAAACATAAAAGAAAAACCTGAACCACAGATCAGGACAAAAGAGACTGACAGATCA
CCCAGCAGGACTGAACCTCGACAACCACCAAGTGCCTTCCCCGCCCGAGGAGGTAGGAGA
GTGGTCAAGAGTCCTCAAAGGTCATCAAGTAAAATAAAAGAAAACAAGCACCCATTTGCC
CTTTATGGGTGGGGAGAAAAACAGACGGATACAGGAAGCCAGAAAACTCACAACGTCTGT
GCTTCTGCTCCAGTGCATGAGGTGGGTGCCAGTGAGCGGGCCTCTCTGATTTCCCCTGTG
GTCACCATCATACTTTGGGACATGGTAGGGCTTAGGGGATGGTAGGGTGGGCCAAGAACT
GGGCCAGAACTGGGCCTCTGATTTGCAAACAGGATTCGGGATGTTAGATGCCTGGCGGTC
AAGGGGTTTTGCTGGGAGTTAGCTGGTACCTGGAAGGGTTTAACAACAACAAGCCAGGTG
GAGAGGTAGCAGGTGTGGGGGGACCAGGCTGTACAGAGGAGGGGCATGGCCAAGGCTGGT
GGCTGCCTGTCCACATTTGCCCCTGGCCTCCCAAGGGTCTCTTGCTCTTTGGGCTTGATC
ACCTATGTCCACCCTCTTGACTCCTTTGTGACAGTTTGTCTCTTCATTCGCATCCCCTGC
TTTCCTGATGTCTATCTGACTCCATTTTTCTCTTGGGATTAAATGGTG------------
------------------------------------------------------------
------------------------------------------------------------
TGTAAGTTGCAGATGTAGCTCGGATCCCACATTGCT

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTAAACCTAATTTTAAAGCATTCATCCTTTTTTATCTCCTCCTTCAAAAAGCACTGTCA
GTGAAAAACATAAAAGAAAAACCTGAACCACAGATCAGGACAAAAGAGACTGACAGATCA
CCCAGCAGGACTGAACCTCGACAACCACCAAGTGCCTTCCCCGCCCGAGGAGGTAGGAGA
GTGGTCAAGAGTCCTCAAAGGTCATCAAGTAAAATAAAAGAAAACAAGCACCCATTTGCC
CTTTATGGGTGGGGAGAAAAACAGACGGATACAGGAAGCCAGAAAACTCACAACGTCTGT
GCTTCTGCTCCAGTGCATGAGGTGGGTGCCAGTGAGCGGGCCTCTCTGATTTCCCCTGTG
GTCACCATCATACTTTGGGACATGGTAGGGCTTAGGGGATGGTAGGGTGGGCCAAGAACT
GGGCCAGAACTGGGCCTCTGATTTGCAAACAGGATTCGGGATGTTAGATGCCTGGCGGTC
AAGGGGTTTTGCTGGGAGTTAGCTGGTACCTGGAAGGGTTTAACAACAACAAGCCAGGTG
GAGAGGTAGCAGGTGTGGGGGGACCAGGCTGTACAGAGGAGGGGCATGGCCAAGGCTGGT
GGCTGCCTGTCCACATTTGCCCCTGGCCTCCCAAGGGTCTCTTGCTCTTTGGGCTTGATC
ACCTATGTCCACCCTCTTGACTCCTTTGTGACAGTTTGTCTCTTCATTCGCATCCCCTGC
TTTCCTGATGTCTATCTGACTCCATTTTTCTCTTGGGATTAAATGGTG------------
------------------------------------------------------------
------------------------------------------------------------
TGTAAGTTGCAGATGTAGCTCGGATCCCACATTGCT

Coded protein: 1 entry(ies)

More info

Coded protein: 1 entry(ies)

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               gi|61882517|ref|XP_585065.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|61882517|ref|XP_585065.1|

Aligned organism(s): 5 entry(ies)

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Aligned organism(s): 5 entry(ies)

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               1-358, gnl|bosTau2|chr28 (560246-560600)
               

               
               1-358, gnl|Hg17|chr1 (225769538-225769184)
               

               
               1-358, gnl|Mm7|chr8 (122432645-122432280)
               


               
               559-764, gnl|bosTau2|chr28 (561705-561913)
               

               
               559-764, gnl|Hg17|chr1 (225768925-225768735)

Aligned organism(s): 5 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               1-358, gnl|bosTau2|chr28 (560246-560600)
               

               
               1-358, gnl|Hg17|chr1 (225769538-225769184)
               

               
               1-358, gnl|Mm7|chr8 (122432645-122432280)
               


               
               559-764, gnl|bosTau2|chr28 (561705-561913)
               

               
               559-764, gnl|Hg17|chr1 (225768925-225768735)

	1-358, gnl\|bosTau2\|chr28 (560246-560600)
	1-358, gnl\|Hg17\|chr1 (225769538-225769184)
	1-358, gnl\|Mm7\|chr8 (122432645-122432280)

	559-764, gnl\|bosTau2\|chr28 (561705-561913)
	559-764, gnl\|Hg17\|chr1 (225768925-225768735)