Non-Coding RNA Search

Ss1.1-Pig1-129I20.5

Sequence:


               
               TGTGCTCCCTCTCTCCAGGACTGGTTATCTTGTATN------------TAATGATAATAT
ATTTTTCCCTCCATGCTCCCCACTCCCCTGTGCTCACCCCAATCCGCCAGTGTTTCTGAA
TGTTCGTGTCTGTGGTTCATTCCTTTCCCCGGGGAAAAAAAGAAACTCGCATGTTTAATG
TGAACTCTCCCCCTCCCCATCTGTGTTCTTCTAACTTATTTATAAAAAGATGGTCGCTGT
ATTTTGAGTTTCAGCTTGAAACTTCTCTCAAAGGGGCAGCAGTTGAGGTAGGATAGTGCC
GCAGTGCCCCGGGCCCAGCTGAGCTGGCCTCCGGGTTGGAATCGGTGACTGTGTCTCTTT
CCACCTTCCTATTCCTCCTCCCTCCTCTCTCCTGGGCCCAAGTCTCCCTTGGCTTGGTCC
TGGGGTGGGAGGGGGCCAGGAAGGTCCAAAGGGGTGATATTGAGAAGAGGGAAGGTAAAT
AGTGAGATTTAAGTTCCTGCCGCCTGGGTAGGCCCCACAAGGCCTGGTCTGGGAGTGTCA
GGAAACAAAAATAATCCTCAGTGTAAAATGTCTTGTGTATTTCTCTGTGAATCCAAGGGC
CTGGTGTCGAGGGCCCAAAGCTTGCAAATATGGGGAAGGGTCTGGGTCAGACCCATCCCC
TCCTTTCTCCCCATTTCGCATTTCGCTTCCAAGACCGTTTGTAGTGAGCGAGTGGAAGCT
GTGCTACGTGTGAAATCTGTCTTTGCCGGGCCTGTCTCAGTGATTCGCTTTTGGTATTTG
TTTGTAGCTTTCCTTGAAGTCAAATAAATGTTTCCCTACTCCAAAAAAAAAAAAAAAAAA

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               TGTGCTCCCTCTCTCCAGGACTGGTTATCTTGTATN------------TAATGATAATAT
ATTTTTCCCTCCATGCTCCCCACTCCCCTGTGCTCACCCCAATCCGCCAGTGTTTCTGAA
TGTTCGTGTCTGTGGTTCATTCCTTTCCCCGGGGAAAAAAAGAAACTCGCATGTTTAATG
TGAACTCTCCCCCTCCCCATCTGTGTTCTTCTAACTTATTTATAAAAAGATGGTCGCTGT
ATTTTGAGTTTCAGCTTGAAACTTCTCTCAAAGGGGCAGCAGTTGAGGTAGGATAGTGCC
GCAGTGCCCCGGGCCCAGCTGAGCTGGCCTCCGGGTTGGAATCGGTGACTGTGTCTCTTT
CCACCTTCCTATTCCTCCTCCCTCCTCTCTCCTGGGCCCAAGTCTCCCTTGGCTTGGTCC
TGGGGTGGGAGGGGGCCAGGAAGGTCCAAAGGGGTGATATTGAGAAGAGGGAAGGTAAAT
AGTGAGATTTAAGTTCCTGCCGCCTGGGTAGGCCCCACAAGGCCTGGTCTGGGAGTGTCA
GGAAACAAAAATAATCCTCAGTGTAAAATGTCTTGTGTATTTCTCTGTGAATCCAAGGGC
CTGGTGTCGAGGGCCCAAAGCTTGCAAATATGGGGAAGGGTCTGGGTCAGACCCATCCCC
TCCTTTCTCCCCATTTCGCATTTCGCTTCCAAGACCGTTTGTAGTGAGCGAGTGGAAGCT
GTGCTACGTGTGAAATCTGTCTTTGCCGGGCCTGTCTCAGTGATTCGCTTTTGGTATTTG
TTTGTAGCTTTCCTTGAAGTCAAATAAATGTTTCCCTACTCCAAAAAAAAAAAAAAAAAA

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               329-559, + strand, RNAz p=0.99969

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               329-559, + strand, RNAz p=0.99969

Predicted microRNA(s): 1 entry(ies)

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Predicted microRNA(s): 1 entry(ies)

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               376-487, + strand, RNAmicro p=0.999994

Predicted microRNA(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               376-487, + strand, RNAmicro p=0.999994

Similar Transcript(s): 6 entry(ies)

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Similar Transcript(s): 6 entry(ies)

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               373-559, BX106448 Soares placenta Nb2HP Homo sapiens cDNA clone 
(emb|BX106448.1|), blast E-value=6.00036e-42, identity=87.83% 
               

               
               346-559, 428256 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI537946.1|), 
blast E-value=0, identity=88.32% 
               

               
               373-559, UI-H-DH1-awt-j-01-0-UI.s1 NCI_CGAP_DH1 Homo sapiens cDNA clone 
(gb|BQ001097.1|), blast E-value=1.99993e-41, identity=87.83% 
               

               
               373-559, UI-HF-ES0-avy-m-21-0-UI.r1 NIH_MGC_213 Homo sapiens cDNA clone 
(gb|CF129554.1|), blast E-value=1.99993e-41, identity=87.83% 
               

               
               373-559, 17000600090650 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN264645.1|), blast E-value=1.99993e-41, identity=87.83% 
               

               
               423-559, GL-Cf-5597 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN748805.1|), blast E-value=1.99993e-41, identity=91.24%

Similar Transcript(s): 6 entry(ies)

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PigEST conread start position and end position of sequence similarity to another annotated EST (NCBI dbEST),
transcript identifier and annotation,
blast E-value,
PigEST conread identity to the similar transcript


               
               373-559, BX106448 Soares placenta Nb2HP Homo sapiens cDNA clone 
(emb|BX106448.1|), blast E-value=6.00036e-42, identity=87.83% 
               

               
               346-559, 428256 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb|BI537946.1|), 
blast E-value=0, identity=88.32% 
               

               
               373-559, UI-H-DH1-awt-j-01-0-UI.s1 NCI_CGAP_DH1 Homo sapiens cDNA clone 
(gb|BQ001097.1|), blast E-value=1.99993e-41, identity=87.83% 
               

               
               373-559, UI-HF-ES0-avy-m-21-0-UI.r1 NIH_MGC_213 Homo sapiens cDNA clone 
(gb|CF129554.1|), blast E-value=1.99993e-41, identity=87.83% 
               

               
               373-559, 17000600090650 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence 
(gb|CN264645.1|), blast E-value=1.99993e-41, identity=87.83% 
               

               
               423-559, GL-Cf-5597 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue 
(gb|DN748805.1|), blast E-value=1.99993e-41, identity=91.24%

Homologous human UTR: 1 entry(ies)

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Homologous human UTR: 1 entry(ies)

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               5' of NM_002147, +

Homologous human UTR: 1 entry(ies)

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Human gene identifier and UTR site,
human gene reading direction


               
               5' of NM_002147, +

Aligned organism(s): 3 entry(ies)

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Aligned organism(s): 3 entry(ies)

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               4-811, gnl|bosTau2|chr19 (31210431-31209620)
               

               
               4-811, gnl|Hg17|chr17 (44024411-44023618)
               

               
               4-811, gnl|Mm7|chr11 (96414342-96415160)

Aligned organism(s): 3 entry(ies)

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PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               4-811, gnl|bosTau2|chr19 (31210431-31209620)
               

               
               4-811, gnl|Hg17|chr17 (44024411-44023618)
               

               
               4-811, gnl|Mm7|chr11 (96414342-96415160)

	373-559, BX106448 Soares placenta Nb2HP Homo sapiens cDNA clone (emb\|BX106448.1\|), blast E-value=6.00036e-42, identity=87.83%
	346-559, 428256 MARC 4BOV Bos taurus cDNA 5', mRNA sequence (gb\|BI537946.1\|), blast E-value=0, identity=88.32%
	373-559, UI-H-DH1-awt-j-01-0-UI.s1 NCI_CGAP_DH1 Homo sapiens cDNA clone (gb\|BQ001097.1\|), blast E-value=1.99993e-41, identity=87.83%
	373-559, UI-HF-ES0-avy-m-21-0-UI.r1 NIH_MGC_213 Homo sapiens cDNA clone (gb\|CF129554.1\|), blast E-value=1.99993e-41, identity=87.83%
	373-559, 17000600090650 GRN_PRENEU Homo sapiens cDNA 5', mRNA sequence (gb\|CN264645.1\|), blast E-value=1.99993e-41, identity=87.83%
	423-559, GL-Cf-5597 GLGC-LIB0001-cf Canis familiaris Normalized Mixed Tissue (gb\|DN748805.1\|), blast E-value=1.99993e-41, identity=91.24%

	4-811, gnl\|bosTau2\|chr19 (31210431-31209620)
	4-811, gnl\|Hg17\|chr17 (44024411-44023618)
	4-811, gnl\|Mm7\|chr11 (96414342-96415160)