Non-Coding RNA Search

Ss1.1-Pig1-129J02.5

Sequence:


               
               GGCAGAAGCTGAAGGGCACCGTGCGCCGTGTGGTCCTGCGAGGGGAGGTTGCCTATATCG
ACGGGCAGGTGCTGGTGCCGCCTGGCTACGGGCAGGATGTTCGCAAGTGGCCTCAGGGAG
CTGTTCCCCAGCTCACGCCTGCAGCCCCAGCCACCAGTGAGATAACCACGACCCCGGAAA
GGCCCCGCCGGGGCATCCCAGTGCTTCCCGATGGCCGCTTCCACCTGCCACCCCGAATCC
ACCGAGCCTCTGACCCAGGTTTGCCAGCTGAGGAGCCAAAGGAGAAGTCGTCCCGGAAGG
CAGCCGAGCCAGACCTGATGGGAACCCTTGATGGCACCTGCTATCTTCCACCACCAGTAC
CTAGACAGGCGTCACCCCAGAACCTGGGGGCTCCGGGCCTGCTGCACCCCCAGACCTCAC
CCCTGCTGCACTCTTTAGTGGGCCAGCACATCCTGTCTGTCCGGCAGTTCACCAAGGATC
AGATGTCTCACCTGTTCAACGTGGCACACATGCTGCGTATGATGGTGCAGAAGGAGCGGA
GCCTCGACATCCTCAGAGGGGAAGGTGATGGCCTCCATGTTCTACGAGGTGAGCACGCGG
ACCAGCAGCTCCTTTGCAGCAGCCATGGCCCGGCTCGGGGGCGCCGTGCTCGGCTTCTCT
GAAGCCACGTCCTCCGTCCAGAAGGGCGAATCCCTGGCGGACTCAGTGCAGACCATGAGC
TGCTACGCCGACGTTGTGGTGCTGCGGCACCCCCAGCCCGGGGCGGTGGAGCTGGCAGCC
AAGCACTGCCGGCGGCCAGTGATC

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               GGCAGAAGCTGAAGGGCACCGTGCGCCGTGTGGTCCTGCGAGGGGAGGTTGCCTATATCG
ACGGGCAGGTGCTGGTGCCGCCTGGCTACGGGCAGGATGTTCGCAAGTGGCCTCAGGGAG
CTGTTCCCCAGCTCACGCCTGCAGCCCCAGCCACCAGTGAGATAACCACGACCCCGGAAA
GGCCCCGCCGGGGCATCCCAGTGCTTCCCGATGGCCGCTTCCACCTGCCACCCCGAATCC
ACCGAGCCTCTGACCCAGGTTTGCCAGCTGAGGAGCCAAAGGAGAAGTCGTCCCGGAAGG
CAGCCGAGCCAGACCTGATGGGAACCCTTGATGGCACCTGCTATCTTCCACCACCAGTAC
CTAGACAGGCGTCACCCCAGAACCTGGGGGCTCCGGGCCTGCTGCACCCCCAGACCTCAC
CCCTGCTGCACTCTTTAGTGGGCCAGCACATCCTGTCTGTCCGGCAGTTCACCAAGGATC
AGATGTCTCACCTGTTCAACGTGGCACACATGCTGCGTATGATGGTGCAGAAGGAGCGGA
GCCTCGACATCCTCAGAGGGGAAGGTGATGGCCTCCATGTTCTACGAGGTGAGCACGCGG
ACCAGCAGCTCCTTTGCAGCAGCCATGGCCCGGCTCGGGGGCGCCGTGCTCGGCTTCTCT
GAAGCCACGTCCTCCGTCCAGAAGGGCGAATCCCTGGCGGACTCAGTGCAGACCATGAGC
TGCTACGCCGACGTTGTGGTGCTGCGGCACCCCCAGCCCGGGGCGGTGGAGCTGGCAGCC
AAGCACTGCCGGCGGCCAGTGATC

Coded protein: 1 entry(ies)

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Coded protein: 1 entry(ies)

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               gi|1333845|emb|CAA42954.1|

Coded protein: 1 entry(ies)

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Protein identifier


               
               gi|1333845|emb|CAA42954.1|

Predicted RNA structure(s): 1 entry(ies)

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Predicted RNA structure(s): 1 entry(ies)

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               349-468, - strand, RNAz p=0.657479

Predicted RNA structure(s): 1 entry(ies)

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PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               349-468, - strand, RNAz p=0.657479

Aligned organism(s): 9 entry(ies)

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Aligned organism(s): 9 entry(ies)

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               170-272, gnl|bosTau2|chr11 (52084119-52084017)
               

               
               170-272, gnl|Hg17|chr2 (27374783-27374885)
               

               
               170-272, gnl|Mm7|chr5 (30107604-30107706)
               


               
               310-488, gnl|bosTau2|chr11 (52083253-52083075)
               

               
               310-488, gnl|Hg17|chr2 (27375574-27375752)
               

               
               310-488, gnl|Mm7|chr5 (30108468-30108646)
               


               
               551-804, gnl|bosTau2|chr11 (52082385-52082134)
               

               
               551-804, gnl|Hg17|chr2 (27376418-27376673)
               

               
               551-804, gnl|Mm7|chr5 (30109174-30109455)

Aligned organism(s): 9 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               170-272, gnl|bosTau2|chr11 (52084119-52084017)
               

               
               170-272, gnl|Hg17|chr2 (27374783-27374885)
               

               
               170-272, gnl|Mm7|chr5 (30107604-30107706)
               


               
               310-488, gnl|bosTau2|chr11 (52083253-52083075)
               

               
               310-488, gnl|Hg17|chr2 (27375574-27375752)
               

               
               310-488, gnl|Mm7|chr5 (30108468-30108646)
               


               
               551-804, gnl|bosTau2|chr11 (52082385-52082134)
               

               
               551-804, gnl|Hg17|chr2 (27376418-27376673)
               

               
               551-804, gnl|Mm7|chr5 (30109174-30109455)

	170-272, gnl\|bosTau2\|chr11 (52084119-52084017)
	170-272, gnl\|Hg17\|chr2 (27374783-27374885)
	170-272, gnl\|Mm7\|chr5 (30107604-30107706)

	310-488, gnl\|bosTau2\|chr11 (52083253-52083075)
	310-488, gnl\|Hg17\|chr2 (27375574-27375752)
	310-488, gnl\|Mm7\|chr5 (30108468-30108646)

	551-804, gnl\|bosTau2\|chr11 (52082385-52082134)
	551-804, gnl\|Hg17\|chr2 (27376418-27376673)
	551-804, gnl\|Mm7\|chr5 (30109174-30109455)