Ss1.1-Pig1-130B24.5
| Sequence: | Distiller database | More info |
| Sequence: | Distiller database | Help | Less info |
| AATTGTATGGTGACTTCCTGAGCTGGCGGCTGGAAGAAACTCTTGCCCAGTTTCCTCTGC AGCCTGGAAAGGTGGCCACATTGACCGTCTGCATCAAAGTGAAGCTGGATTTCTCCTGCC AGGAGAACCTCCTCCAGGACCTGAGTGACGATGGCATCAGCGTGAGCGGCTTCCCGCTGT GCAGCCCCTCGCGCCAGGTCGTGAGGCCTCGGGCGGACAGCAAGCCCGCGAACCCAGCTG AGGGCAGCCGGCCTGGGGACCCCGGCCACGTGAAGACCCTGGAAGCGATCCTGAATTTCA AATACTCCGGAGGCCCCGGCCACGTGGAAGGATATTACAGGAGCCTCGCCCTGGGGCTGC ACGTGGAGGTGGAGCCCTCTGTGTTCTTCACGCGCGTCAGCACGCTGCCCGCCACCAGTA ACCCGGCAGTGCCACCTGCTCCTGGACGTCTTCAACTCCACGGAGCACGAGCTGACGGTC AGTGCCCGGAGCAATGAAGAGCTCATTCTGCACGCGGGCGAGTGCCAGCGAATGGCTATT CAAGTGGACAAGTTCAACTTTGAG |
| Sequence: | Distiller database | Help | Less info |
Blue-coloured subsequences are predicted RNA structures by RNAz
| AATTGTATGGTGACTTCCTGAGCTGGCGGCTGGAAGAAACTCTTGCCCAGTTTCCTCTGC AGCCTGGAAAGGTGGCCACATTGACCGTCTGCATCAAAGTGAAGCTGGATTTCTCCTGCC AGGAGAACCTCCTCCAGGACCTGAGTGACGATGGCATCAGCGTGAGCGGCTTCCCGCTGT GCAGCCCCTCGCGCCAGGTCGTGAGGCCTCGGGCGGACAGCAAGCCCGCGAACCCAGCTG AGGGCAGCCGGCCTGGGGACCCCGGCCACGTGAAGACCCTGGAAGCGATCCTGAATTTCA AATACTCCGGAGGCCCCGGCCACGTGGAAGGATATTACAGGAGCCTCGCCCTGGGGCTGC ACGTGGAGGTGGAGCCCTCTGTGTTCTTCACGCGCGTCAGCACGCTGCCCGCCACCAGTA ACCCGGCAGTGCCACCTGCTCCTGGACGTCTTCAACTCCACGGAGCACGAGCTGACGGTC AGTGCCCGGAGCAATGAAGAGCTCATTCTGCACGCGGGCGAGTGCCAGCGAATGGCTATT CAAGTGGACAAGTTCAACTTTGAG |
| Predicted RNA structure(s): 1 entry(ies) | More info |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
| 30-148, - strand, RNAz p=0.584872 |
| Predicted RNA structure(s): 1 entry(ies) | Help | Less info |
PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz
| 30-148, - strand, RNAz p=0.584872 |
| Aligned organism(s): 34 entry(ies) | More info |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
| 1-148, gnl|bosTau2|chr14 (2723538-2723391) | |
| 1-148, gnl|canFam2|chr13 (38017111-38017277) | |
| 1-148, gnl|dasNov1|scaffold_194005 (787-953) | |
| 1-148, gnl|echTel1|scaffold_184585 (10473-10307) | |
| 1-148, gnl|fr1|chrUn (141046-141209) | |
| 1-148, gnl|galGal2|chr2 (138347693-138347508) | |
| 1-148, gnl|hg17|chr8 (141332052-141332218) | |
| 1-148, gnl|Hg17|chr8 (141332207-141332060) | |
| 1-148, gnl|loxAfr1|scaffold_49190 (7518-7352) | |
| 1-148, gnl|mm7|chr15 (73005244-73005409) | |
| 1-148, gnl|Mm7|chr15 (73005398-73005251) | |
| 1-148, gnl|monDom2|scaffold_3 (6247894-6247725) | |
| 1-148, gnl|oryCun1|scaffold_205686 (173725-173559) | |
| 1-148, gnl|panTro1|chr7 (144373363-144373529) | |
| 1-148, gnl|rheMac2|chr8 (142749460-142749626) | |
| 1-148, gnl|rn3|chr7 (110697847-110698012) | |
| 1-148, gnl|tetNig1|chr20 (2514396-2514559) | |
| 1-148, gnl|xenTro1|scaffold_161 (1581699-1581533) | |
| 274-418, gnl|bosTau2|chr14 (2601176-2601032) | |
| 274-418, gnl|canFam2|chr13 (37820203-37820381) | |
| 274-418, gnl|echTel1|scaffold_160323 (3865-3688) | |
| 274-418, gnl|fr1|chrUn (126732-126886) | |
| 274-418, gnl|galGal2|chr2 (138428140-138427992) | |
| 274-418, gnl|hg17|chr8 (141103189-141103367) | |
| 274-418, gnl|Hg17|chr8 (141103360-141103216) | |
| 274-418, gnl|loxAfr1|scaffold_35730 (35042-34890) | |
| 274-418, gnl|mm7|chr15 (72836950-72837109) | |
| 274-418, gnl|Mm7|chr15 (72837103-72836959) | |
| 274-418, gnl|monDom2|scaffold_3 (6492701-6492553) | |
| 274-418, gnl|panTro1|chr7 (144140852-144141030) | |
| 274-418, gnl|rheMac2|chr8 (142516514-142516692) | |
| 274-418, gnl|rn3|chr7 (110518379-110518533) | |
| 274-418, gnl|tetNig1|chr20 (2498886-2499039) | |
| 274-418, gnl|xenTro1|scaffold_161 (1624479-1624314) |
| Aligned organism(s): 34 entry(ies) | Help | Less info |
PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map
| 1-148, gnl|bosTau2|chr14 (2723538-2723391) | |
| 1-148, gnl|canFam2|chr13 (38017111-38017277) | |
| 1-148, gnl|dasNov1|scaffold_194005 (787-953) | |
| 1-148, gnl|echTel1|scaffold_184585 (10473-10307) | |
| 1-148, gnl|fr1|chrUn (141046-141209) | |
| 1-148, gnl|galGal2|chr2 (138347693-138347508) | |
| 1-148, gnl|hg17|chr8 (141332052-141332218) | |
| 1-148, gnl|Hg17|chr8 (141332207-141332060) | |
| 1-148, gnl|loxAfr1|scaffold_49190 (7518-7352) | |
| 1-148, gnl|mm7|chr15 (73005244-73005409) | |
| 1-148, gnl|Mm7|chr15 (73005398-73005251) | |
| 1-148, gnl|monDom2|scaffold_3 (6247894-6247725) | |
| 1-148, gnl|oryCun1|scaffold_205686 (173725-173559) | |
| 1-148, gnl|panTro1|chr7 (144373363-144373529) | |
| 1-148, gnl|rheMac2|chr8 (142749460-142749626) | |
| 1-148, gnl|rn3|chr7 (110697847-110698012) | |
| 1-148, gnl|tetNig1|chr20 (2514396-2514559) | |
| 1-148, gnl|xenTro1|scaffold_161 (1581699-1581533) | |
| 274-418, gnl|bosTau2|chr14 (2601176-2601032) | |
| 274-418, gnl|canFam2|chr13 (37820203-37820381) | |
| 274-418, gnl|echTel1|scaffold_160323 (3865-3688) | |
| 274-418, gnl|fr1|chrUn (126732-126886) | |
| 274-418, gnl|galGal2|chr2 (138428140-138427992) | |
| 274-418, gnl|hg17|chr8 (141103189-141103367) | |
| 274-418, gnl|Hg17|chr8 (141103360-141103216) | |
| 274-418, gnl|loxAfr1|scaffold_35730 (35042-34890) | |
| 274-418, gnl|mm7|chr15 (72836950-72837109) | |
| 274-418, gnl|Mm7|chr15 (72837103-72836959) | |
| 274-418, gnl|monDom2|scaffold_3 (6492701-6492553) | |
| 274-418, gnl|panTro1|chr7 (144140852-144141030) | |
| 274-418, gnl|rheMac2|chr8 (142516514-142516692) | |
| 274-418, gnl|rn3|chr7 (110518379-110518533) | |
| 274-418, gnl|tetNig1|chr20 (2498886-2499039) | |
| 274-418, gnl|xenTro1|scaffold_161 (1624479-1624314) |