Non-Coding RNA Search

Ss1.1-Pig1-130E08.5

Sequence:


               
               CTTTTACGGTGACTGTGCTTAAAATATCCTCTGATACCAATTGTAAGAGTGAAGTAATAG
AGACCAGCAGAATGGAAGGAAAAGAACTTGCTTAAATTTGCATGAGGAATTGGGAGAAGT
GAACCAATAATTTGTAAATCACACTTCACATTTCTTTTTAAGATGCAAGACACTCCACCT
TCCCCCCCTCCCCATCGTTTGCCCTCAGTTGGGAAGCACAGTGGCTTTTCTGCAAGGAAA
AGATTAACAACAGGATTTAAGACAGAAAGGTCTCTTCCCGGCTTGCCTTTTCCCCTGGCC
TTCCCTCCTCCTAACCCCCAGTTCCCCTGTTTTGGTTCAAGACACTCCCCACCCCACCCC
TGTCTCATTCTAACCAGGCTCCTTCCCTTGCTTTCCTTCTGCGCTGCCCTAACGGAGCGG
AGGTTTTGCGGGAGGCACAGGTGGGCAGCCACTCTGGGCAGAGGTTGCTCCCTTAAGCCT
GAGTCCAGGGCTCACTGTGCTGGTTCCTGGTAACCTGGCTCTGGGGCTTCCTGAGCTCTT
CCCTGAGGGAGAGCCACAGGGCCCCAGGCTGAGGACTGGAGAGTGAGCTGGGAGAGAGTC
CCCCTCAGGCCCACCCCTGTGGGGCTCGATCTTGTGCTGTGGGAACCCATGGAGAGAAGC
TCTGGTTCTGGATTCGCCTCACAGATGGGGGCAGGAGGCCACTGTAGGCTGCTTCCAGCA
GAGGTGGGGCTGTAGTCCCACGTTGTGCTTCTAGTCCTCTAATTACTTGCAGCTTCTACT
TTCTGGGTTTAAGAAAGCCTTTCTAGAGGACGCTCAAGGGCAGCTCTGTGCCGACCCTGG
AATGGTGATCTGTTCTCTCTCTGTGTGAAAGAGATGTGAAAACAGGCTGCTCGGAAATCA
ATAGCATGTGCCCTGTCCAGTGGCCTCAGGCCTCCGCATCAGCCTCTCCCCGTCCATTTC
AGGAAATCAGTG

Sequence:

Distiller database | Help | Less info

Blue-coloured subsequences are predicted RNA structures by RNAz


               
               CTTTTACGGTGACTGTGCTTAAAATATCCTCTGATACCAATTGTAAGAGTGAAGTAATAG
AGACCAGCAGAATGGAAGGAAAAGAACTTGCTTAAATTTGCATGAGGAATTGGGAGAAGT
GAACCAATAATTTGTAAATCACACTTCACATTTCTTTTTAAGATGCAAGACACTCCACCT
TCCCCCCCTCCCCATCGTTTGCCCTCAGTTGGGAAGCACAGTGGCTTTTCTGCAAGGAAA
AGATTAACAACAGGATTTAAGACAGAAAGGTCTCTTCCCGGCTTGCCTTTTCCCCTGGCC
TTCCCTCCTCCTAACCCCCAGTTCCCCTGTTTTGGTTCAAGACACTCCCCACCCCACCCC
TGTCTCATTCTAACCAGGCTCCTTCCCTTGCTTTCCTTCTGCGCTGCCCTAACGGAGCGG
AGGTTTTGCGGGAGGCACAGGTGGGCAGCCACTCTGGGCAGAGGTTGCTCCCTTAAGCCT
GAGTCCAGGGCTCACTGTGCTGGTTCCTGGTAACCTGGCTCTGGGGCTTCCTGAGCTCTT
CCCTGAGGGAGAGCCACAGGGCCCCAGGCTGAGGACTGGAGAGTGAGCTGGGAGAGAGTC
CCCCTCAGGCCCACCCCTGTGGGGCTCGATCTTGTGCTGTGGGAACCCATGGAGAGAAGC
TCTGGTTCTGGATTCGCCTCACAGATGGGGGCAGGAGGCCACTGTAGGCTGCTTCCAGCA
GAGGTGGGGCTGTAGTCCCACGTTGTGCTTCTAGTCCTCTAATTACTTGCAGCTTCTACT
TTCTGGGTTTAAGAAAGCCTTTCTAGAGGACGCTCAAGGGCAGCTCTGTGCCGACCCTGG
AATGGTGATCTGTTCTCTCTCTGTGTGAAAGAGATGTGAAAACAGGCTGCTCGGAAATCA
ATAGCATGTGCCCTGTCCAGTGGCCTCAGGCCTCCGCATCAGCCTCTCCCCGTCCATTTC
AGGAAATCAGTG

Predicted RNA structure(s): 2 entry(ies)

More info

Predicted RNA structure(s): 2 entry(ies)

Help | Less info


               
               218-328, - strand, RNAz p=0.813131
               

               
               788-891, - strand, RNAz p=0.583617

Predicted RNA structure(s): 2 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted RNA structure by RNAz,
PigEST conread reading direction of predicted structure,
ncRNA classificator p of RNAz


               
               218-328, - strand, RNAz p=0.813131
               

               
               788-891, - strand, RNAz p=0.583617

Predicted microRNA(s): 1 entry(ies)

More info

Predicted microRNA(s): 1 entry(ies)

Help | Less info


               
               225-319, + strand, RNAmicro p=0.981006

Predicted microRNA(s): 1 entry(ies)

Help | Less info

PigEST conread start position and end position of the predicted microRNA,
PigEST conread reading direction of prediction,
miRNA classificator p of RNAmicro


               
               225-319, + strand, RNAmicro p=0.981006

Aligned organism(s): 3 entry(ies)

More info

Aligned organism(s): 3 entry(ies)

Help | Less info


               
               3-972, gnl|bosTau2|chr28 (22975095-22974097)
               

               
               3-972, gnl|Hg17|chr10 (75271452-75270413)
               

               
               3-972, gnl|Mm7|chr14 (18416247-18415233)

Aligned organism(s): 3 entry(ies)

Help | Less info

PigEST conread start position and end position of the aligned locus,
aligned organism with chromosome (chromosome position)
closely related Artiodactyla cow is linked to the PigEST - Genome Map


               
               3-972, gnl|bosTau2|chr28 (22975095-22974097)
               

               
               3-972, gnl|Hg17|chr10 (75271452-75270413)
               

               
               3-972, gnl|Mm7|chr14 (18416247-18415233)

	218-328, - strand, RNAz p=0.813131
	788-891, - strand, RNAz p=0.583617

	3-972, gnl\|bosTau2\|chr28 (22975095-22974097)
	3-972, gnl\|Hg17\|chr10 (75271452-75270413)
	3-972, gnl\|Mm7\|chr14 (18416247-18415233)